Uses of Interface
omix.plugin.model.Compartment

Packages that use Compartment

Package	Description
omix.plugin.diagram
omix.plugin.identity
omix.plugin.model
omix.plugin.model.writable
omix.util	This package contains utilities for OVL and Omix plugin development.

Uses of Compartment in omix.plugin.diagram

Methods in omix.plugin.diagram that return Compartment

Modifier and Type	Method	Description
Compartment	CompartmentItem.modelComponent()

Uses of Compartment in omix.plugin.identity

Methods in omix.plugin.identity with parameters of type Compartment

Modifier and Type	Method	Description
Set<PublicIdentifier>	PublicIdentifierProviderInterface.providePublicIdentifiers(Compartment item, PublicIdentifierManager registry)

Uses of Compartment in omix.plugin.model

Methods in omix.plugin.model that return Compartment

Modifier and Type	Method	Description
Compartment	Metabolite.compartment()	returns the compartment this metabolite pool lays in.
Compartment	Compartment.getSubCompartment(String name)	Returns a sub compartment of the given name if available in the compartment, otherwise null.
Compartment	Model.getTopLevelCompartment(String name)	Returns a toplevel compartment of the given name if available, otherwise null.
Compartment	Compartment.outside()	Returns the outside compartment if available otherwise null.

Methods in omix.plugin.model that return types with arguments of type Compartment

Modifier and Type	Method	Description
List<? extends Compartment>	Model.allCompartments()	Returns an unchangeable List of all compartment items.
List<? extends Compartment>	Compartment.subCompartments()	Returns an unchangeable List of all sub compartments.

Methods in omix.plugin.model with parameters of type Compartment

Modifier and Type	Method	Description
Metabolite	MetaboliteType.getMetabolite(Compartment compartment)	Returns the metabolite pool inside the given compartment.

Uses of Compartment in omix.plugin.model.writable

Subinterfaces of Compartment in omix.plugin.model.writable

Modifier and Type	Interface	Description
interface	Compartment

Methods in omix.plugin.model.writable that return Compartment

Modifier and Type	Method	Description
Compartment	Compartment.toReadOnly()

Methods in omix.plugin.model.writable with parameters of type Compartment

Modifier and Type	Method	Description
Metabolite	MetaboliteType.getMetabolite(Compartment compartment)	Returns the metabolite pool inside the given compartment.
Compartment	Model.toWritable(Compartment compartment)

Uses of Compartment in omix.util

Methods in omix.util with parameters of type Compartment

Modifier and Type	Method	Description
static String	NameUtilities.getCompartmentName(Compartment compartment)