Uses of Interface omix.plugin.model.writable.Compartment (Omix API)

Packages that use Compartment
Package	Description
omix.plugin.diagram.writable
omix.plugin.model.writable

Uses of Compartment in omix.plugin.diagram.writable

Methods in omix.plugin.diagram.writable that return Compartment
Modifier and Type	Method	Description
`Compartment`	CompartmentItem.`modelComponent()`

Methods in omix.plugin.diagram.writable with parameters of type Compartment
Modifier and Type	Method	Description
`CompartmentItem`	Diagram.`createCompartmentItem(Compartment component)`
`CompartmentItem`	Diagram.`createCompartmentItem(Compartment compartment, CompartmentItem outside)`
`MetaboliteItem`	Diagram.`createMetabolite(String namePlainText, String nameRichText, Compartment compartment)`
`MetaboliteItem`	Diagram.`createMetabolite(String name, Compartment compartment)`
`MetaboliteItem`	Diagram.`createMetaboliteItem(MetaboliteType metaboliteType, Compartment compartment)`

Uses of Compartment in omix.plugin.model.writable

Methods in omix.plugin.model.writable that return Compartment
Modifier and Type	Method	Description
`Compartment`	Metabolite.`compartment()`	returns the compartment this metabolite pool lays in.
`Compartment`	Model.`createCompartment(String name)`	Create a new compartment item. After creating a new compartment, it must be explicitly added to the model by `Model.addComponent(AbstractModelComponent)`.
`Compartment`	Model.`createCompartment(String namePlainText, String nameRichText)`	Create a new compartment item. After creating a new compartment, it must be explicitly added to the model by `Model.addComponent(AbstractModelComponent)`.
`Compartment`	Model.`createCompartment(String namePlainText, String nameRichText, Compartment outside)`	Create a new compartment item inside another compartment. After creating a new compartment, it must be explicitly added to the model by `Model.addComponent(AbstractModelComponent)`.
`Compartment`	Model.`createCompartment(String name, Compartment outside)`	Create a new compartment item inside another compartment. After creating a new compartment, it must be explicitly added to the model by `Model.addComponent(AbstractModelComponent)`.
`Compartment`	Compartment.`getSubCompartment(String name)`	Returns a sub compartment of the given name if available in the compartment, otherwise null.
`Compartment`	Model.`getTopLevelCompartment(String name)`	Returns a toplevel compartment of the given name if available, otherwise null.
`Compartment`	Compartment.`outside()`	Returns the outside compartment if available otherwise null.
`Compartment`	Model.`toWritable(Compartment compartment)`

Methods in omix.plugin.model.writable that return types with arguments of type Compartment
Modifier and Type	Method	Description
`List<? extends Compartment>`	Model.`allCompartments()`	Returns an unchangeable `List` of all compartment items.
`List<? extends Compartment>`	Compartment.`subCompartments()`	Returns an unchangeable `List` of all sub compartments.

Methods in omix.plugin.model.writable with parameters of type Compartment
Modifier and Type	Method	Description
`Compartment`	Model.`createCompartment(String namePlainText, String nameRichText, Compartment outside)`	Create a new compartment item inside another compartment. After creating a new compartment, it must be explicitly added to the model by `Model.addComponent(AbstractModelComponent)`.
`Compartment`	Model.`createCompartment(String name, Compartment outside)`	Create a new compartment item inside another compartment. After creating a new compartment, it must be explicitly added to the model by `Model.addComponent(AbstractModelComponent)`.
`Metabolite`	Model.`createMetabolite(String namePlainText, String nameRichText, Compartment compartment)`	Creates a new metabolite with the given unique name lying in the given compartment.
`Metabolite`	Model.`createMetabolite(String name, Compartment compartment)`	Creates a new metabolite with the given unique name lying in the given compartment.