Uses of Interface omix.plugin.model.writable.Metabolite (Omix API)

Packages that use Metabolite
Package	Description
omix.plugin.diagram.writable
omix.plugin.model.writable

Uses of Metabolite in omix.plugin.diagram.writable

Methods in omix.plugin.diagram.writable that return Metabolite

Modifier and Type Method Description

Metabolite MetaboliteItem.modelComponent()

Uses of Metabolite in omix.plugin.model.writable

Methods in omix.plugin.model.writable that return Metabolite
Modifier and Type	Method	Description
`Metabolite`	Model.`createMetabolite(String name)`	Creates a new metabolite with the given unique name and returns a visible instance of the metabolite (`Metabolite`).
`Metabolite`	Model.`createMetabolite(String namePlainText, String nameRichText)`	Creates a new metabolite with the given unique name and returns a visible instance of the metabolite (`Metabolite`).
`Metabolite`	Model.`createMetabolite(String namePlainText, String nameRichText, Compartment compartment)`	Creates a new metabolite with the given unique name lying in the given compartment.
`Metabolite`	Model.`createMetabolite(String name, Compartment compartment)`	Creates a new metabolite with the given unique name lying in the given compartment.
`Metabolite`	Compartment.`getMetabolite(String name)`	Returns the metabolite node of the given name if available in the compartment, otherwise null.
`Metabolite`	MetaboliteType.`getMetabolite(Compartment compartment)`	Returns the metabolite pool inside the given compartment.
`Metabolite`	Model.`getMetabolite(String name)`	Returns the (compartment free) metabolite node of the given name if available, otherwise null.
`default Metabolite`	MetaboliteType.`getNonCompartmentalizedMetabolite()`
`Metabolite`	EffectorEdge.`src()`
`Metabolite`	Model.`toWritable(Metabolite metabolite)`

Methods in omix.plugin.model.writable that return types with arguments of type Metabolite
Modifier and Type	Method	Description
`Collection<? extends Metabolite>`	Reaction.`getEductMetabolites()`	Returns a list of all metabolite instances being connected by incoming flux edges.
`Collection<? extends Metabolite>`	Reaction.`getEffectorMetabolites()`	Returns a list of all metabolite instances being connected by effector edges.
`List<? extends Metabolite>`	MetaboliteType.`getExistingMetabolites()`
`List<? extends Metabolite>`	MetaboliteType.`getExistingMetabolites(Diagram diagram)`
`Collection<? extends Metabolite>`	Reaction.`getProductMetabolites()`	Returns a list of all metabolite instances being connected by outgoing flux edges.
`List<? extends Metabolite>`	Compartment.`metabolites()`	Returns an unchangeable `List` of all metabolites that occur in this compartment.
`List<? extends Metabolite>`	MetaboliteType.`metabolites()`	Returns all metabolite pools of different compartments.
`List<? extends Metabolite>`	Model.`metabolites()`	Returns an unchangeable `List` of all metabolite nodes.

Methods in omix.plugin.model.writable with parameters of type Metabolite
Modifier and Type	Method	Description
`LinkEdge`	Model.`createEffectorEdge(Metabolite src, Link dst, double effect)`	Creates a new link edge with effector edge appearance between a source node and destination link.
`EffectorEdge`	Model.`createEffectorEdge(Metabolite src, Reaction dst, double effect)`	Creates a new effector edge between a source and destination node with the given effect.