Module omix.api

Package omix.plugin.diagram

Interface ReactionItem

All Superinterfaces:

AbstractBioNodeItem, AbstractItem, AbstractModelItem, AbstractNodeItem, Groupable, ReadOnlyInterface

All Known Subinterfaces:

ReactionItem

public interface ReactionItem
extends AbstractBioNodeItem

Method Summary

Modifier and Type	Method	Description
Collection<? extends MetaboliteItem>	getEductMetabolites()	Returns a list of all metabolite items being connected by incoming flux edges.
Collection<? extends MetaboliteItem>	getEffectorMetabolites()	Returns a list of all metabolite items being connected by effector edges.
Collection<? extends MetaboliteItem>	getProductMetabolites()	Returns a list of all metabolite items being connected by outgoing flux edges.
Reaction	modelComponent()
PathwayItem	pathway()

Methods inherited from interface omix.plugin.diagram.AbstractBioNodeItem

effectorEdges, inEdges, outEdges

Methods inherited from interface omix.plugin.diagram.AbstractItem

addChangeListener, addPropertyChangeListener, diagram, getIdentifier, removeChangeListener, removePropertyChangeListener

Methods inherited from interface omix.plugin.diagram.AbstractModelItem

getAccessoryItem, getAccessoryItem, getAccessoryItem, getAccessoryItem, getAccessoryItems, getAccessoryItems, getAllAccessoryItems, getField, getField

Methods inherited from interface omix.plugin.diagram.AbstractNodeItem

accessoryAnchorFloating, accessoryAnchorPlacement, accessoryAnchorX, accessoryAnchorY, accessoryFloating, accessoryOrientation, accessorySpacing, collapsed, commentExists, comments, getComment, getCustomProperty, graphicsEdges, hasInvalidPosition, height, hidden, isPlacedOnLayoutPattern, labelFloating, labelHidden, labelPlacement, labelRotation, labelX, labelY, patternObject, setCustomProperty, setTmpCustomProperty, width, x, y, zValue

Methods inherited from interface omix.plugin.diagram.Groupable

group

Method Details

modelComponent

Reaction modelComponent()

Specified by:

modelComponent in interface AbstractBioNodeItem

Specified by:

modelComponent in interface AbstractModelItem

Specified by:

modelComponent in interface AbstractNodeItem

pathway

PathwayItem pathway()

getProductMetabolites

Collection<? extends MetaboliteItem> getProductMetabolites()

Returns a list of all metabolite items being connected by outgoing flux edges.

Returns:

unmodifiable list of product metabolites

getEductMetabolites

Collection<? extends MetaboliteItem> getEductMetabolites()

Returns a list of all metabolite items being connected by incoming flux edges.

Returns:

unmodifiable list of educt metabolites

getEffectorMetabolites

Collection<? extends MetaboliteItem> getEffectorMetabolites()

Returns a list of all metabolite items being connected by effector edges.

Returns:

unmodifiable list of effector metabolites