Module omix.api

Package omix.plugin.diagram.writable

Interface ReactionItem

All Superinterfaces:

AbstractBioNodeItem, AbstractBioNodeItem, AbstractItem, AbstractItem, AbstractModelItem, AbstractModelItem, AbstractNodeItem, AbstractNodeItem, Groupable, Groupable, ReactionItem, ReadOnlyInterface, WritableInterface

public interface ReactionItem
extends AbstractBioNodeItem, ReactionItem

Method Summary

Modifier and Type	Method	Description
Collection<? extends MetaboliteItem>	getEductMetabolites()	Returns a list of all metabolite items being connected by incoming flux edges.
Collection<? extends MetaboliteItem>	getEffectorMetabolites()	Returns a list of all metabolite items being connected by effector edges.
Collection<? extends MetaboliteItem>	getProductMetabolites()	Returns a list of all metabolite items being connected by outgoing flux edges.
Reaction	modelComponent()
PathwayItem	pathway()
ReactionItem	toReadOnly()

Methods inherited from interface omix.plugin.diagram.writable.AbstractBioNodeItem

effectorEdges, inEdges, outEdges

Methods inherited from interface omix.plugin.diagram.AbstractItem

addChangeListener, addPropertyChangeListener, getIdentifier, removeChangeListener, removePropertyChangeListener

Methods inherited from interface omix.plugin.diagram.writable.AbstractItem

diagram, isChangeable

Methods inherited from interface omix.plugin.diagram.AbstractModelItem

getAccessoryItem, getAccessoryItem

Methods inherited from interface omix.plugin.diagram.writable.AbstractModelItem

getAccessoryItem, getAccessoryItem, getAccessoryItems, getAccessoryItems, getAllAccessoryItems, getField, getField

Methods inherited from interface omix.plugin.diagram.AbstractNodeItem

accessoryAnchorFloating, accessoryAnchorPlacement, accessoryAnchorX, accessoryAnchorY, accessoryFloating, accessoryOrientation, accessorySpacing, collapsed, commentExists, getCustomProperty, hasInvalidPosition, height, hidden, isPlacedOnLayoutPattern, labelFloating, labelHidden, labelPlacement, labelRotation, labelX, labelY, setCustomProperty, setTmpCustomProperty, width, x, y, zValue

Methods inherited from interface omix.plugin.diagram.writable.AbstractNodeItem

comments, getComment, graphicsEdges, group, linkEdges, patternObject, setAccessoryAnchorFloating, setAccessoryAnchorPlacement, setAccessoryAnchorPosition, setAccessoryFloating, setAccessoryOrientation, setAccessorySpacing, setCollapsed, setDefaultCollapsed, setHidden, setLabelFloating, setLabelHidden, setLabelPlacement, setLabelPosition, setLabelRotation, setPosition, setSize, setZValue

Method Details

modelComponent

Reaction modelComponent()

Specified by:

modelComponent in interface AbstractBioNodeItem

Specified by:

modelComponent in interface AbstractBioNodeItem

Specified by:

modelComponent in interface AbstractModelItem

Specified by:

modelComponent in interface AbstractModelItem

Specified by:

modelComponent in interface AbstractNodeItem

Specified by:

modelComponent in interface AbstractNodeItem

Specified by:

modelComponent in interface ReactionItem

pathway

PathwayItem pathway()

Specified by:

pathway in interface ReactionItem

toReadOnly

ReactionItem toReadOnly()

Specified by:

toReadOnly in interface AbstractBioNodeItem

Specified by:

toReadOnly in interface AbstractItem

Specified by:

toReadOnly in interface AbstractModelItem

Specified by:

toReadOnly in interface AbstractNodeItem

Specified by:

toReadOnly in interface Groupable

Specified by:

toReadOnly in interface WritableInterface

getProductMetabolites

Collection<? extends MetaboliteItem> getProductMetabolites()

Returns a list of all metabolite items being connected by outgoing flux edges.

Specified by:

getProductMetabolites in interface ReactionItem

Returns:

unmodifiable list of product metabolites

getEductMetabolites

Collection<? extends MetaboliteItem> getEductMetabolites()

Returns a list of all metabolite items being connected by incoming flux edges.

Specified by:

getEductMetabolites in interface ReactionItem

Returns:

unmodifiable list of educt metabolites

getEffectorMetabolites

Collection<? extends MetaboliteItem> getEffectorMetabolites()

Returns a list of all metabolite items being connected by effector edges.

Specified by:

getEffectorMetabolites in interface ReactionItem

Returns:

unmodifiable list of effector metabolites