Module omix.api

Package omix.plugin.diagram.writable

Interface AbstractModelItem

All Superinterfaces:

AbstractItem, AbstractItem, AbstractModelItem, ReadOnlyInterface, WritableInterface

All Known Subinterfaces:

AbstractBioNodeItem, AbstractEdgeItem, AbstractNodeItem, CompartmentItem, EffectorEdgeItem, FluxEdgeItem, GraphicsBoxItem, GraphicsEdgeItem, GraphicsNodeItem, GraphicsPathItem, LinkEdgeItem, LinkItem, MetaboliteItem, PathwayItem, ReactionItem

public interface AbstractModelItem
extends AbstractItem, AbstractModelItem

Method Summary

Modifier and Type	Method	Description
default AccessoryItem	getAccessoryItem(String accessoryName)	Returns the accessory item of the submitted name defined in the namespace.
AccessoryItem	getAccessoryItem(String namespace, String accessoryName)	Returns the accessory item of the submitted name defined in the namespace.
List<? extends AccessoryItem>	getAccessoryItems()	Returns all accessory items defined in the document embedded OVL script.
List<? extends AccessoryItem>	getAccessoryItems(String namespace)	Returns all accessory items defined in the given namespace.
List<? extends AccessoryItem>	getAllAccessoryItems()	Returns all accessory items defined in the document embedded OVL script and all namespaces.
Field	getField(String fieldName)	Returns the field of the submitted network object defined in the document embedded OVL script.
Field	getField(String namespace, String fieldName)	Returns the field of the submitted network object defined in the give namespace.
AbstractModelComponent	modelComponent()
AbstractModelItem	toReadOnly()

Methods inherited from interface omix.plugin.diagram.AbstractItem

addChangeListener, addPropertyChangeListener, getIdentifier, removeChangeListener, removePropertyChangeListener

Methods inherited from interface omix.plugin.diagram.writable.AbstractItem

diagram, isChangeable

Methods inherited from interface omix.plugin.diagram.AbstractModelItem

getAccessoryItem, getAccessoryItem

Method Details

modelComponent

AbstractModelComponent modelComponent()

Specified by:

modelComponent in interface AbstractModelItem

getAccessoryItem

AccessoryItem getAccessoryItem(String namespace, String accessoryName) throws IllegalAccessException, NoSuchFieldException

Returns the accessory item of the submitted name defined in the namespace.

Specified by:

getAccessoryItem in interface AbstractModelItem

Parameters:

namespace -

accessoryName -

Returns:

accessory item

Throws:

IllegalAccessException - if accessory item is protected

NoSuchFieldException - if accessory item does not exist

getAccessoryItem

default AccessoryItem getAccessoryItem(String accessoryName) throws IllegalAccessException, NoSuchFieldException

Returns the accessory item of the submitted name defined in the namespace.

Specified by:

getAccessoryItem in interface AbstractModelItem

Parameters:

accessoryName -

Returns:

accessory item

Throws:

IllegalAccessException - if accessory is protected

NoSuchFieldException - if accessory does not exist

getAllAccessoryItems

List<? extends AccessoryItem> getAllAccessoryItems()

Returns all accessory items defined in the document embedded OVL script and all namespaces.

Specified by:

getAllAccessoryItems in interface AbstractModelItem

Returns:

unmodifiable list of accessory items

getAccessoryItems

List<? extends AccessoryItem> getAccessoryItems()

Returns all accessory items defined in the document embedded OVL script.

Specified by:

getAccessoryItems in interface AbstractModelItem

Returns:

unmodifiable list of accessory items

Throws:

IllegalArgumentException - if object is not a network item

getAccessoryItems

List<? extends AccessoryItem> getAccessoryItems(String namespace)

Returns all accessory items defined in the given namespace.

Specified by:

getAccessoryItems in interface AbstractModelItem

Parameters:

namespace -

Returns:

unmodifiable list of accessory items

Throws:

IllegalArgumentException - if object is not a network item

getField

Field getField(String fieldName) throws IllegalAccessException, NoSuchFieldException

Returns the field of the submitted network object defined in the document embedded OVL script.

Specified by:

getField in interface AbstractModelItem

Parameters:

fieldName -

Returns:

reference object representing the field

Throws:

IllegalAccessException - if field is protected

NoSuchFieldException - if field does not exist

getField

Field getField(String namespace, String fieldName) throws IllegalAccessException, NoSuchFieldException

Returns the field of the submitted network object defined in the give namespace.

Specified by:

getField in interface AbstractModelItem

Parameters:

namespace -

fieldName -

Returns:

reference object representing the field

Throws:

IllegalAccessException - if field is protected

NoSuchFieldException - if field does not exist

toReadOnly

AbstractModelItem toReadOnly()

Specified by:

toReadOnly in interface AbstractItem

Specified by:

toReadOnly in interface WritableInterface