Uses of Interface
omix.plugin.diagram.writable.LinkItem

Packages that use LinkItem

Package	Description
omix.plugin.diagram.writable
omix.plugin.model.writable

Uses of LinkItem in omix.plugin.diagram.writable

Methods in omix.plugin.diagram.writable that return LinkItem

Modifier and Type	Method	Description
default LinkItem	Diagram.createLink(File file)
LinkItem	Diagram.createLink(File file, String description)	Create a new link to given model file. After creating a new link, it must be explicitly added to the model by #addComponent(AbstractModelComponent).
LinkItem	Diagram.createLink(String description)	Create a new link item. After creating a new item, it must be explicitly added to the model by Diagram.addItem(AbstractItem).
default LinkItem	Diagram.createLink(Diagram diagram)
LinkItem	Diagram.createLink(Diagram diagram, String description)	Create a new link to given model file. After creating a new link, it must be explicitly added to the model by #addComponent(AbstractModelComponent).
LinkItem	Diagram.createLink(Pathway pathway)	Create a new link to given pathway. After creating a new link, it must be explicitly added to the model by #addComponent(AbstractModelComponent).
LinkItem	Diagram.createLinkItem(Link component)
LinkItem	Diagram.toWritable(LinkItem edge)

Methods in omix.plugin.diagram.writable that return types with arguments of type LinkItem

Modifier and Type	Method	Description
List<? extends LinkItem>	Diagram.getLinkItems(String name)
List<? extends LinkItem>	Diagram.links()	Returns an unchangeable List of all links.

Methods in omix.plugin.diagram.writable with parameters of type LinkItem

Modifier and Type	Method	Description
LinkEdgeItem	Diagram.createCofactorEdge(AbstractBioNodeItem src, LinkItem dst, double coefficient, List<? extends AbstractCurvePoint> points)	Creates a new link edge with flux edge appearance between a source node and a link.
default LinkEdgeItem	Diagram.createCofactorEdge(AbstractBioNodeItem src, LinkItem dst, double coefficient, AbstractCurvePoint... points)	Creates a new link edge with flux edge appearance between a source node and a link.
default LinkEdgeItem	Diagram.createCofactorEdge(AbstractBioNodeItem src, LinkItem dst, List<? extends AbstractCurvePoint> points)	Creates a new link edge with flux edge appearance between a source node and a link.
default LinkEdgeItem	Diagram.createCofactorEdge(AbstractBioNodeItem src, LinkItem dst, AbstractCurvePoint... points)	Creates a new link edge with flux edge appearance between a source node and a link.
LinkEdgeItem	Diagram.createCofactorEdge(LinkItem src, AbstractBioNodeItem dst, double coefficient, List<? extends AbstractCurvePoint> points)	Creates a new link edge with flux edge appearance between a link and destination node.
default LinkEdgeItem	Diagram.createCofactorEdge(LinkItem src, AbstractBioNodeItem dst, double coefficient, AbstractCurvePoint... points)	Creates a new link edge with flux edge appearance between a link and destination node.
default LinkEdgeItem	Diagram.createCofactorEdge(LinkItem src, AbstractBioNodeItem dst, List<? extends AbstractCurvePoint> points)	Creates a new link edge with flux edge appearance between a link and destination node.
default LinkEdgeItem	Diagram.createCofactorEdge(LinkItem src, AbstractBioNodeItem dst, AbstractCurvePoint... points)	Creates a new link edge with flux edge appearance between a link and destination node.
LinkEdgeItem	Diagram.createEffectorEdge(LinkItem src, ReactionItem dst, double effect, List<? extends AbstractCurvePoint> points)	Creates a new link edge with effector edge appearance between a link and destination node.
default LinkEdgeItem	Diagram.createEffectorEdge(LinkItem src, ReactionItem dst, double effect, AbstractCurvePoint... points)	Creates a new link edge with effector edge appearance between a link and destination node.
LinkEdgeItem	Diagram.createEffectorEdge(MetaboliteItem src, LinkItem dst, double effect, List<? extends AbstractCurvePoint> points)	Creates a new link edge with effector edge appearance between a source node and a link.
default LinkEdgeItem	Diagram.createEffectorEdge(MetaboliteItem src, LinkItem dst, double effect, AbstractCurvePoint... points)	Creates a new link edge with effector edge appearance between a source node and a link.
LinkEdgeItem	Diagram.createFluxEdge(AbstractBioNodeItem src, LinkItem dst, double coefficient, List<? extends AbstractCurvePoint> points)	Creates a new link edge with flux edge appearance between a source node and a link.
default LinkEdgeItem	Diagram.createFluxEdge(AbstractBioNodeItem src, LinkItem dst, double coefficient, AbstractCurvePoint... points)	Creates a new link edge with flux edge appearance between a source node and a link.
default LinkEdgeItem	Diagram.createFluxEdge(AbstractBioNodeItem src, LinkItem dst, List<? extends AbstractCurvePoint> points)	Creates a new link edge with flux edge appearance between a source node and a link.
default LinkEdgeItem	Diagram.createFluxEdge(AbstractBioNodeItem src, LinkItem dst, AbstractCurvePoint... points)	Creates a new link edge with flux edge appearance between a source node and a link.
LinkEdgeItem	Diagram.createFluxEdge(LinkItem src, AbstractBioNodeItem dst, double coefficient, List<? extends AbstractCurvePoint> points)	Creates a new link edge with flux edge appearance between a link and destination node.
default LinkEdgeItem	Diagram.createFluxEdge(LinkItem src, AbstractBioNodeItem dst, double coefficient, AbstractCurvePoint... points)	Creates a new link edge with flux edge appearance between a link and destination node.
default LinkEdgeItem	Diagram.createFluxEdge(LinkItem src, AbstractBioNodeItem dst, List<? extends AbstractCurvePoint> points)	Creates a new link edge with flux edge appearance between a link and destination node.
default LinkEdgeItem	Diagram.createFluxEdge(LinkItem src, AbstractBioNodeItem dst, AbstractCurvePoint... points)	Creates a new link edge with flux edge appearance between a link and destination node.
LinkEdgeItem	Diagram.createGraphicsEdge(AbstractNodeItem src, LinkItem dst, List<? extends AbstractCurvePoint> points)	Creates a new link edge between a source node and a link.
default LinkEdgeItem	Diagram.createGraphicsEdge(AbstractNodeItem src, LinkItem dst, AbstractCurvePoint... points)	Creates a new link edge between a source node and a link.
LinkEdgeItem	Diagram.createGraphicsEdge(LinkItem src, AbstractNodeItem dst, List<? extends AbstractCurvePoint> points)	Creates a new link edge between a link and destination node.
default LinkEdgeItem	Diagram.createGraphicsEdge(LinkItem src, AbstractNodeItem dst, AbstractCurvePoint... points)	Creates a new link edge between a link and destination node.
LinkEdgeItem	Diagram.createLinkEdgeItem(LinkEdge edge, AbstractNodeItem src, LinkItem dst, List<? extends AbstractCurvePoint> points)
default LinkEdgeItem	Diagram.createLinkEdgeItem(LinkEdge edge, AbstractNodeItem src, LinkItem dst, AbstractCurvePoint... points)
LinkEdgeItem	Diagram.createLinkEdgeItem(LinkEdge edge, LinkItem src, AbstractNodeItem dst, List<? extends AbstractCurvePoint> points)
default LinkEdgeItem	Diagram.createLinkEdgeItem(LinkEdge edge, LinkItem src, AbstractNodeItem dst, AbstractCurvePoint... points)

Uses of LinkItem in omix.plugin.model.writable

Methods in omix.plugin.model.writable that return types with arguments of type LinkItem

Modifier and Type	Method	Description
List<? extends LinkItem>	Link.getDiagramItems()
List<? extends LinkItem>	Link.getDiagramItems(Diagram diagram)