Uses of Interface
omix.plugin.diagram.writable.MetaboliteItem

Packages that use MetaboliteItem

Package	Description
omix.plugin.diagram.writable
omix.plugin.io	This package contains interfaces allowing to realize file input output operations.
omix.plugin.model.writable

Uses of MetaboliteItem in omix.plugin.diagram.writable

Methods in omix.plugin.diagram.writable that return MetaboliteItem

Modifier and Type	Method	Description
MetaboliteItem	Diagram.createMetabolite(String name)	Creates a new metabolite with the given unique name and returns a visible instance of the metabolite (MetaboliteItem).
MetaboliteItem	Diagram.createMetabolite(String namePlainText, String nameRichText)	Creates a new metabolite with the given unique name and returns a visible instance of the metabolite (MetaboliteItem).
MetaboliteItem	Diagram.createMetabolite(String namePlainText, String nameRichText, CompartmentItem compartment)	Creates a new metabolite with the given unique name lying in the given compartment.
MetaboliteItem	Diagram.createMetabolite(String namePlainText, String nameRichText, Compartment compartment)
MetaboliteItem	Diagram.createMetabolite(String name, CompartmentItem compartment)	Creates a new metabolite with the given unique name lying in the given compartment.
MetaboliteItem	Diagram.createMetabolite(String name, Compartment compartment)
MetaboliteItem	Diagram.createMetaboliteItem(Metabolite metabolite)	Creates another visible instance of the metabolite in the diagram (a duplicate node).
MetaboliteItem	Diagram.createMetaboliteItem(Metabolite metabolite, CompartmentItem compartment)
MetaboliteItem	Diagram.createMetaboliteItem(MetaboliteType metaboliteType, CompartmentItem compartment)
MetaboliteItem	Diagram.createMetaboliteItem(MetaboliteType metaboliteType, Compartment compartment)
MetaboliteItem	Diagram.toWritable(MetaboliteItem metabolite)

Methods in omix.plugin.diagram.writable that return types with arguments of type MetaboliteItem

Modifier and Type	Method	Description
Collection<? extends MetaboliteItem>	ReactionItem.getEductMetabolites()	Returns a list of all metabolite items being connected by incoming flux edges.
Collection<? extends MetaboliteItem>	ReactionItem.getEffectorMetabolites()	Returns a list of all metabolite items being connected by effector edges.
List<? extends MetaboliteItem>	Diagram.getMetaboliteItems(CompartmentItem compartment, String name)
List<? extends MetaboliteItem>	CompartmentItem.getMetabolites(String name)
Collection<? extends MetaboliteItem>	ReactionItem.getProductMetabolites()	Returns a list of all metabolite items being connected by outgoing flux edges.
List<? extends MetaboliteItem>	CompartmentItem.metabolites()
List<? extends MetaboliteItem>	Diagram.metabolites()	Returns an unchangeable List of all metabolite nodes.

Methods in omix.plugin.diagram.writable with parameters of type MetaboliteItem

Modifier and Type	Method	Description
LinkEdgeItem	Diagram.createEffectorEdge(MetaboliteItem src, LinkItem dst, double effect, List<? extends AbstractCurvePoint> points)	Creates a new link edge with effector edge appearance between a source node and a link.
default LinkEdgeItem	Diagram.createEffectorEdge(MetaboliteItem src, LinkItem dst, double effect, AbstractCurvePoint... points)	Creates a new link edge with effector edge appearance between a source node and a link.
EffectorEdgeItem	Diagram.createEffectorEdge(MetaboliteItem src, ReactionItem dst, double effect, List<? extends AbstractCurvePoint> points)	Creates a new effector edge between a source and destination node with the given effect.
default EffectorEdgeItem	Diagram.createEffectorEdge(MetaboliteItem src, ReactionItem dst, double effect, AbstractCurvePoint... points)	Creates a new effector edge between a source and destination node with the given effect.
EffectorEdgeItem	Diagram.createEffectorEdgeItem(EffectorEdge edge, MetaboliteItem src, ReactionItem dst, List<? extends AbstractCurvePoint> points)
default EffectorEdgeItem	Diagram.createEffectorEdgeItem(EffectorEdge edge, MetaboliteItem src, ReactionItem dst, AbstractCurvePoint... points)

Uses of MetaboliteItem in omix.plugin.io

Methods in omix.plugin.io that return MetaboliteItem

Modifier and Type	Method	Description
MetaboliteItem	ModelComponentProviderInterface.provideMetabolite(Diagram diagram, InputUtilities utilities)

Uses of MetaboliteItem in omix.plugin.model.writable

Methods in omix.plugin.model.writable that return types with arguments of type MetaboliteItem

Modifier and Type	Method	Description
List<? extends MetaboliteItem>	Metabolite.getDiagramItems()
List<? extends MetaboliteItem>	Metabolite.getDiagramItems(Diagram diagram)