Uses of Interface
omix.plugin.diagram.writable.PathwayItem

Packages that use PathwayItem

Package	Description
omix.plugin.diagram.writable
omix.plugin.io	This package contains interfaces allowing to realize file input output operations.
omix.plugin.model.writable

Uses of PathwayItem in omix.plugin.diagram.writable

Methods in omix.plugin.diagram.writable that return PathwayItem

Modifier and Type	Method	Description
PathwayItem	Diagram.createPathway(String name)	Create a new pathway item.
PathwayItem	Diagram.createPathway(String namePlainText, String nameRichText)	Create a new pathway item.
PathwayItem	Diagram.createPathwayItem(Pathway component)
PathwayItem	ReactionItem.pathway()
PathwayItem	Diagram.toWritable(PathwayItem pathway)

Methods in omix.plugin.diagram.writable that return types with arguments of type PathwayItem

Modifier and Type	Method	Description
List<? extends PathwayItem>	Diagram.getPathwayItems(String name)
List<? extends PathwayItem>	Diagram.pathways()	Returns an unchangeable List of all pathway items.

Methods in omix.plugin.diagram.writable with parameters of type PathwayItem

Modifier and Type	Method	Description
Comment	Diagram.createItemComment(PathwayItem item)
ReactionItem	Diagram.createReaction(String namePlainText, String nameRichText, PathwayItem pathway)	Create a new reaction item belonging to the given pathway. After creating a new reaction, it must be explicitly added to the model by Diagram.addItem(omix.plugin.diagram.writable.AbstractItem).
ReactionItem	Diagram.createReaction(String name, PathwayItem pathway)	Create a new reaction item belonging to the given pathway. After creating a new reaction, it must be explicitly added to the model by Diagram.addItem(omix.plugin.diagram.writable.AbstractItem).
ReactionItem	Diagram.createReactionItem(Reaction component, PathwayItem pathway)

Uses of PathwayItem in omix.plugin.io

Methods in omix.plugin.io that return PathwayItem

Modifier and Type	Method	Description
PathwayItem	ModelComponentProviderInterface.providePathway(Diagram diagram, InputUtilities utilities)

Uses of PathwayItem in omix.plugin.model.writable

Methods in omix.plugin.model.writable that return types with arguments of type PathwayItem

Modifier and Type	Method	Description
List<? extends PathwayItem>	Pathway.getDiagramItems()
List<? extends PathwayItem>	Pathway.getDiagramItems(Diagram diagram)