All Superinterfaces:: AbstractModelComponent, AbstractVisibleComponent, ReadOnlyInterface

All Known Subinterfaces:: Pathway

public interface Pathway
extends AbstractVisibleComponent

Method Summary

Modifier and Type	Method	Description
`double`	`blur()`	The item's blur.
`Brush`	`brush()`	The fill brush of the item's shape.
`Font`	`font()`	The item's text label font.
`Object`	`getCustomProperty(String name)`	Returns the value of the custom property or `null` if not available.
`List<? extends PathwayItem>`	`getDiagramItems()`
`List<? extends PathwayItem>`	`getDiagramItems(Diagram diagram)`
`Set<? extends PublicIdentifier>`	`getPublicIdentifiers()`	Returns the components public identifiers
`Reaction`	`getReaction(String name)`
`boolean`	`hidden()`	Visibility of the network component.
`FormattedName`	`name()`	Returns the item's name label as formatted text (html).
`double`	`reactionBlur()`	The blur of the node.
`boolean`	`reactionCollapsed()`	Collapsed-state of the network component.
`double`	`reactionFillLevel()`	The filling level of the item's shape given as percentage value.
`FillLevelIndication`	`reactionFillLevelIndication()`	The indication for filling of the item's shape.
`Font`	`reactionFont()`	The font of the text label of the item.
`Paint`	`reactionPaint()`	The fill appearance of the item's shape.
`List<? extends Reaction>`	`reactions()`
`double`	`reactionScale()`	The scale factor the node is displayed with.
`Shadow`	`reactionShadow()`	The shadow of the item.
`Shape`	`reactionShape()`	The appearance of the reaction node in the diagram.
`Color`	`reactionStrokeColor()`	The color for the stroke of the item's shape.
`StrokeStyle`	`reactionStrokeStyle()`	The paint style for the stroke of the item's shape.
`double`	`reactionStrokeWidth()`	The stroke width of the item's shape.
`Brush`	`reactionTextBrush()`	The fill brush of the item's text label.
`Color`	`reactionTextStrokeColor()`	The color for the stroke of the item's text label.
`double`	`reactionTextStrokeWidth()`	The stroke width of the item's text label.
`double`	`reactionTransparency()`	The transparency of the node.
`void`	`setCustomProperty(String name, Object value)`	Adds a custom property to the network item.
`void`	`setTmpCustomProperty(String name, Object value)`	Adds a temporary custom property to the network item.
`double`	`strength()`	This field specifies the strength of the contour the pathway paints around its reactions and edges.
`Color`	`strokeColor()`	The color for the stroke of the item's shape.
`StrokeStyle`	`strokeStyle()`	The paint style for the stroke of the item's shape.
`double`	`strokeWidth()`	The stroke width of the item's shape.
`Synonyms`	`synonyms()`	Returns the synonyms of the item.
`double`	`textBlur()`	The blur of the item's text.
`Brush`	`textBrush()`	The fill brush of the item's text label.
`Shadow`	`textShadow()`	The shadow of the item's text.
`Color`	`textStrokeColor()`	The color for the stroke of the item's text label.
`double`	`textStrokeWidth()`	The stroke width of the item's text label.
`double`	`textTransparency()`	The transparency of the item's text.
`double`	`transparency()`	The item's transparency.

Methods inherited from interface omix.plugin.model.AbstractModelComponent

addChangeListener, addPropertyChangeListener, fieldExists, getField, getField, getIdentifier, model, removeChangeListener, removePropertyChangeListener

Methods inherited from interface omix.plugin.model.AbstractVisibleComponent

accessoryExists, getAccessories, getAccessories, getAccessory, getAccessory, getAccessory, getAccessory, getAllAccessories, hasDiagramItems, hasDiagramItems

Method Details
- name
  
  FormattedName name()
  
  Returns the item's name label as formatted text (html).
  
  Returns:
  
  name as formatted text
  
  Since:
  
  Omix 1.9.0
- getDiagramItems
  
  List<? extends PathwayItem> getDiagramItems()
  
  Specified by:
  
  getDiagramItems in interface AbstractVisibleComponent
- getDiagramItems
  
  List<? extends PathwayItem> getDiagramItems(Diagram diagram)
  
  Specified by:
  
  getDiagramItems in interface AbstractVisibleComponent
- synonyms
  
  Synonyms synonyms()
  
  Returns the synonyms of the item.
  
  Returns:
  
  synonyms
- getPublicIdentifiers
  
  Set<? extends PublicIdentifier> getPublicIdentifiers()
  
  Returns the components public identifiers
  
  Returns:
  
  set of public identifiers
- strokeColor
  
  Color strokeColor()
  
  The color for the stroke of the item's shape.
- textStrokeColor
  
  Color textStrokeColor()
  
  The color for the stroke of the item's text label.
- brush
  
  Brush brush()
  
  The fill brush of the item's shape.
- textBrush
  
  Brush textBrush()
  
  The fill brush of the item's text label.
- strokeStyle
  
  StrokeStyle strokeStyle()
  
  The paint style for the stroke of the item's shape.
- strokeWidth
  
  double strokeWidth()
  
  The stroke width of the item's shape.
- textStrokeWidth
  
  double textStrokeWidth()
  
  The stroke width of the item's text label.
- textShadow
  
  Shadow textShadow()
  
  The shadow of the item's text.
- textBlur
  
  double textBlur()
  
  The blur of the item's text.
- textTransparency
  
  double textTransparency()
  
  The transparency of the item's text.
- blur
  
  double blur()
  
  The item's blur.
- transparency
  
  double transparency()
  
  The item's transparency.
- font
  
  Font font()
  
  The item's text label font.
- strength
  
  double strength()
  
  This field specifies the strength of the contour the pathway paints around its reactions and edges.
- hidden
  
  boolean hidden()
  
  Visibility of the network component.
  
  Returns:
  
  hidden
- reactions
  
  List<? extends Reaction> reactions()
- getReaction
  
  Reaction getReaction(String name)
- setCustomProperty
  
  void setCustomProperty(String name, Object value) throws IllegalAccessException
  
  Adds a custom property to the network item. Each item can carry arbitrary values as custom property. The property content is stored to the document file as far as possible. If the value cannot be saved to file, the property is removed after relaunch. Custom properties can be accessed from all namespaces. Set null to remove property. Setting custom properties in OVL is undoable.
  
  Parameters:
  
  name -
  
  value -
  
  Throws:
  
  IllegalAccessException
  
  See Also:
  
  setTmpCustomProperty(String, Object), getCustomProperty(String), #customPropertyNames()
- setTmpCustomProperty
  
  void setTmpCustomProperty(String name, Object value) throws IllegalAccessException
  
  Adds a temporary custom property to the network item. Each item can carry arbitrary values as custom property. The property content is not stored to the document file. Instead, the property is removed after relaunch. Custom properties can be accessed from all namespaces. Set null to remove property. Setting custom properties in OVL is undoable.
  
  Parameters:
  
  name -
  
  value -
  
  Throws:
  
  IllegalAccessException
  
  See Also:
  
  setCustomProperty(String, Object), getCustomProperty(String), #customPropertyNames()
- getCustomProperty
  
  Object getCustomProperty(String name)
  
  Returns the value of the custom property or null if not available.
  
  Parameters:
  
  name -
  
  Returns:
  
  value
- reactionStrokeWidth
  
  double reactionStrokeWidth()
  
  The stroke width of the item's shape.
- reactionTextStrokeWidth
  
  double reactionTextStrokeWidth()
  
  The stroke width of the item's text label.
- reactionScale
  
  double reactionScale()
  
  The scale factor the node is displayed with. Values less than 1.0 decreases the node's size. Values greater than 1.0 increases its size.
- reactionFillLevel
  
  double reactionFillLevel()
  
  The filling level of the item's shape given as percentage value.
- reactionBlur
  
  double reactionBlur()
  
  The blur of the node.
- reactionTransparency
  
  double reactionTransparency()
  
  The transparency of the node.
- reactionCollapsed
  
  boolean reactionCollapsed()
  
  Collapsed-state of the network component.
- reactionPaint
  
  Paint reactionPaint()
  
  The fill appearance of the item's shape.
- reactionShadow
  
  Shadow reactionShadow()
  
  The shadow of the item.
- reactionStrokeColor
  
  Color reactionStrokeColor()
  
  The color for the stroke of the item's shape.
- reactionTextStrokeColor
  
  Color reactionTextStrokeColor()
  
  The color for the stroke of the item's text label.
- reactionStrokeStyle
  
  StrokeStyle reactionStrokeStyle()
  
  The paint style for the stroke of the item's shape.
- reactionShape
  
  Shape reactionShape()
  
  The appearance of the reaction node in the diagram.
- reactionFont
  
  Font reactionFont()
  
  The font of the text label of the item.
- reactionFillLevelIndication
  
  FillLevelIndication reactionFillLevelIndication()
  
  The indication for filling of the item's shape.
- reactionTextBrush
  
  Brush reactionTextBrush()
  
  The fill brush of the item's text label.

Interface Pathway

Method Summary

Methods inherited from interface omix.plugin.model.AbstractModelComponent

Methods inherited from interface omix.plugin.model.AbstractVisibleComponent

Method Details