Module omix.api

Package omix.plugin.model

Interface AbstractVisibleComponent

All Superinterfaces:

AbstractModelComponent, ReadOnlyInterface

All Known Subinterfaces:

AbstractBioNode, AbstractBioNode, AbstractEdge, AbstractEdge, AbstractNode, AbstractNode, AbstractVisibleComponent, Compartment, Compartment, EffectorEdge, EffectorEdge, FluxEdge, FluxEdge, GraphicsBox, GraphicsBox, GraphicsEdge, GraphicsEdge, GraphicsNode, GraphicsNode, GraphicsPath, GraphicsPath, Link, Link, LinkEdge, LinkEdge, Metabolite, Metabolite, Pathway, Pathway, Reaction, Reaction

public interface AbstractVisibleComponent
extends AbstractModelComponent

Method Summary

Modifier and Type	Method	Description
boolean	accessoryExists(String namespace, String accessoryName)
List<? extends Accessory>	getAccessories()	Returns all accessories defined in the document embedded OVL script.
List<? extends Accessory>	getAccessories(String namespace)	Returns all accessories defined in the given namespace.
default Accessory	getAccessory(String accessoryName)	Returns the accessory of the submitted name defined in the namespace.
default <T extends Accessory> T	getAccessory(String accessoryName, Class<T> accessoryItemClass)
Accessory	getAccessory(String namespace, String accessoryName)	Returns the accessory of the submitted name defined in the namespace.
default <T extends Accessory> T	getAccessory(String namespace, String accessoryName, Class<T> accessoryItemClass)
List<? extends Accessory>	getAllAccessories()	Returns all accessories defined in the document embedded OVL script and all namespaces.
List<? extends AbstractModelItem>	getDiagramItems()
List<? extends AbstractModelItem>	getDiagramItems(Diagram diagram)
boolean	hasDiagramItems()
boolean	hasDiagramItems(Diagram diagram)

Methods inherited from interface omix.plugin.model.AbstractModelComponent

addChangeListener, addPropertyChangeListener, fieldExists, getField, getField, getIdentifier, model, removeChangeListener, removePropertyChangeListener

Method Details

getDiagramItems

List<? extends AbstractModelItem> getDiagramItems()

getDiagramItems

List<? extends AbstractModelItem> getDiagramItems(Diagram diagram)

hasDiagramItems

boolean hasDiagramItems(Diagram diagram)

hasDiagramItems

boolean hasDiagramItems()

accessoryExists

boolean accessoryExists(String namespace, String accessoryName)

getAccessory

Accessory getAccessory(String namespace, String accessoryName) throws IllegalAccessException, NoSuchFieldException

Returns the accessory of the submitted name defined in the namespace.

Parameters:

namespace -

accessoryName -

Returns:

accessory

Throws:

IllegalAccessException - if accessory is protected

NoSuchFieldException - if accessory does not exist

getAccessory

default <T extends Accessory> T getAccessory(String namespace, String accessoryName, Class<T> accessoryItemClass) throws IllegalAccessException, NoSuchFieldException

Throws:

IllegalAccessException

NoSuchFieldException

getAccessory

default Accessory getAccessory(String accessoryName) throws IllegalAccessException, NoSuchFieldException

Returns the accessory of the submitted name defined in the namespace.

Parameters:

accessoryName -

Returns:

accessory

Throws:

IllegalAccessException - if accessory is protected

NoSuchFieldException - if accessory does not exist

getAccessory

default <T extends Accessory> T getAccessory(String accessoryName, Class<T> accessoryItemClass) throws IllegalAccessException, NoSuchFieldException

Throws:

IllegalAccessException

NoSuchFieldException

getAllAccessories

List<? extends Accessory> getAllAccessories()

Returns all accessories defined in the document embedded OVL script and all namespaces.

Returns:

unmodifiable list of accessories

getAccessories

List<? extends Accessory> getAccessories()

Returns all accessories defined in the document embedded OVL script.

Returns:

unmodifiable list of accessories

Throws:

IllegalArgumentException - if object is not a network item

getAccessories

List<? extends Accessory> getAccessories(String namespace)

Returns all accessories defined in the given namespace.

Parameters:

namespace -

Returns:

unmodifiable list of accessories

Throws:

IllegalArgumentException - if object is not a network item