Uses of Interface omix.plugin.model.writable.Link (Omix API)

Packages that use Link
Package	Description
omix.plugin.diagram.writable
omix.plugin.model.writable

Uses of Link in omix.plugin.diagram.writable

Methods in omix.plugin.diagram.writable that return Link

Modifier and Type Method Description

Link LinkItem.modelComponent()

Methods in omix.plugin.diagram.writable with parameters of type Link

Modifier and Type Method Description

LinkItem Diagram.createLinkItem(Link component)

Uses of Link in omix.plugin.model.writable

Methods in omix.plugin.model.writable that return Link
Modifier and Type	Method	Description
`default Link`	Model.`createLink(File file)`
`Link`	Model.`createLink(File file, String description)`	Create a new link to given model file. After creating a new link, it must be explicitly added to the model by `Model.addComponent(AbstractModelComponent)`.
`Link`	Model.`createLink(String description)`	Create a new link. After creating a new link, it must be explicitly added to the model by `Model.addComponent(AbstractModelComponent)`.
`default Link`	Model.`createLink(Diagram diagram)`
`Link`	Model.`createLink(Diagram diagram, String description)`	Create a new link to given model file. After creating a new link, it must be explicitly added to the model by `Model.addComponent(AbstractModelComponent)`.
`Link`	Model.`createLink(Pathway pathway)`	Create a new link to given pathway. After creating a new link, it must be explicitly added to the model by `Model.addComponent(AbstractModelComponent)`.
`Link`	Model.`getLink(String identifier)`	Returns the link by identifier if available, otherwise null.
`Link`	Model.`toWritable(Link node)`

Methods in omix.plugin.model.writable that return types with arguments of type Link
Modifier and Type	Method	Description
`List<? extends Link>`	Model.`links()`	Returns an unchangeable `List` of all links.

Methods in omix.plugin.model.writable with parameters of type Link
Modifier and Type	Method	Description
`default LinkEdge`	Model.`createCofactorEdge(AbstractBioNode src, Link dst)`
`LinkEdge`	Model.`createCofactorEdge(AbstractBioNode src, Link dst, double coefficient)`	Creates a new link edge with flux edge appearance between a source node and destination link.
`default LinkEdge`	Model.`createCofactorEdge(Link src, AbstractBioNode dst)`
`LinkEdge`	Model.`createCofactorEdge(Link src, AbstractBioNode dst, double coefficient)`	Creates a new link edge with flux edge appearance between a source link and destination node.
`LinkEdge`	Model.`createEffectorEdge(Link src, Reaction dst, double effect)`	Creates a new link edge with effector edge appearance between a source link and destination node.
`LinkEdge`	Model.`createEffectorEdge(Metabolite src, Link dst, double effect)`	Creates a new link edge with effector edge appearance between a source node and destination link.
`default LinkEdge`	Model.`createFluxEdge(AbstractBioNode src, Link dst)`
`LinkEdge`	Model.`createFluxEdge(AbstractBioNode src, Link dst, double coefficient)`	Creates a new link edge with flux edge appearance between a source node and destination link.
`default LinkEdge`	Model.`createFluxEdge(Link src, AbstractBioNode dst)`
`LinkEdge`	Model.`createFluxEdge(Link src, AbstractBioNode dst, double coefficient)`	Creates a new link edge with flux edge appearance between a source link and destination node.
`LinkEdge`	Model.`createGraphicsEdge(AbstractNode src, Link dst)`	Creates a new link edge between a source node and destination link.
`LinkEdge`	Model.`createGraphicsEdge(Link src, AbstractNode dst)`	Creates a new link edge between a source link and destination node.