All Superinterfaces:: AbstractBioNode, AbstractModelComponent, AbstractModelComponent, AbstractNode, AbstractNode, AbstractVisibleComponent, AbstractVisibleComponent, ReadOnlyInterface, WritableInterface

All Known Subinterfaces:: Metabolite, Reaction

public interface AbstractBioNode
extends AbstractNode, AbstractBioNode

Method Summary

Modifier and Type	Method	Description
`List<? extends EffectorEdge>`	`effectorEdges()`	Returns an unchangeable `List` of all effector edges of this node.
`List<? extends FluxEdge>`	`fluxEdges()`
`List<? extends AbstractBioNodeItem>`	`getDiagramItems()`
`List<? extends AbstractBioNodeItem>`	`getDiagramItems(Diagram diagram)`
`List<? extends FluxEdge>`	`inEdges()`	Returns an unchangeable `List` of all incoming flux edges of this node.
`List<? extends FluxEdge>`	`outEdges()`	Returns an unchangeable `List` of all outgoing flux edges of this node.
`void`	`setBlurDefault()`	The blur of the node.
`void`	`setCollapsedDefault()`
`void`	`setFillLevelDefault()`	Changes the fill level of the item's shape to default value.
`void`	`setFillLevelIndicationDefault()`	Changes the indication for filling of the item's shape to default.
`void`	`setFontDefault()`	Changes the font of the text label of the item to default.
`void`	`setPaintDefault()`	Sets the fill appearance of the item's shape to default.
`void`	`setScaleDefault()`	Changes the scale factor the node is displayed with to default.
`void`	`setShadowDefault()`	Sets the shadow of the item to default.
`void`	`setShapeDefault()`	Changes the appearance of the metabolite node in the diagram to default.
`void`	`setStrokeColorDefault()`	Sets the color for the stroke of the item's shape to default.
`void`	`setStrokeStyleDefault()`	Changes the paint style for the stroke of the item's shape to default.
`void`	`setStrokeWidthDefault()`	Changes the stroke width of the item's shape to default.
`void`	`setTextBrushDefault()`	Changes the fill brush of the item's text label to default.
`void`	`setTextStrokeColorDefault()`	Changes the color for the stroke of the item's text label to default.
`void`	`setTextStrokeWidthDefault()`	Changes the stroke width of the item's text label to default.
`void`	`setTransparencyDefault()`	Changes the transparency of the item's shape to default.
`AbstractBioNode`	`toReadOnly()`

Methods inherited from interface omix.plugin.model.AbstractBioNode

getPublicIdentifiers, name, synonyms

Methods inherited from interface omix.plugin.model.AbstractModelComponent

addChangeListener, addPropertyChangeListener, fieldExists, removeChangeListener, removePropertyChangeListener

Methods inherited from interface omix.plugin.model.writable.AbstractModelComponent

getField, getField, isChangeable, model

Methods inherited from interface omix.plugin.model.AbstractNode

blur, collapsed, fillLevel, fillLevelIndication, font, getCustomProperty, getIdentifier, hidden, paint, scale, setCustomProperty, setTmpCustomProperty, shadow, shape, strokeColor, strokeStyle, strokeWidth, textBrush, textStrokeColor, textStrokeWidth, transparency

Methods inherited from interface omix.plugin.model.writable.AbstractNode

edges, graphicsEdges, linkEdges, setBlur, setCollapsed, setFillLevel, setFillLevelIndication, setFont, setHidden, setPaint, setScale, setShadow, setShape, setStrokeColor, setStrokeStyle, setStrokeWidth, setTextBrush, setTextStrokeColor, setTextStrokeWidth, setTransparency

Methods inherited from interface omix.plugin.model.AbstractVisibleComponent

accessoryExists, getAccessory, getAccessory, hasDiagramItems, hasDiagramItems

Methods inherited from interface omix.plugin.model.writable.AbstractVisibleComponent

getAccessories, getAccessories, getAccessory, getAccessory, getAllAccessories, getCustomProperty, getMethod, getMethod, getMethod, setCustomProperty, setTmpCustomProperty

Method Details
- setPaintDefault
  
  void setPaintDefault() throws IllegalChangeException
  
  Sets the fill appearance of the item's shape to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Node#paintField
- setTransparencyDefault
  
  void setTransparencyDefault() throws IllegalChangeException
  
  Changes the transparency of the item's shape to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Node.transparency()
- setBlurDefault
  
  void setBlurDefault() throws IllegalChangeException
  
  The blur of the node.
  
  Throws:
  
  IllegalChangeException
- setCollapsedDefault
  
  void setCollapsedDefault() throws IllegalChangeException
  
  Throws:
  
  IllegalChangeException
- setFillLevelDefault
  
  void setFillLevelDefault() throws IllegalChangeException
  
  Changes the fill level of the item's shape to default value.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Node.fillLevel()
- setTextStrokeWidthDefault
  
  void setTextStrokeWidthDefault() throws IllegalChangeException
  
  Changes the stroke width of the item's text label to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Node.textStrokeWidth()
- setScaleDefault
  
  void setScaleDefault() throws IllegalChangeException
  
  Changes the scale factor the node is displayed with to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Node.scale()
- setStrokeWidthDefault
  
  void setStrokeWidthDefault() throws IllegalChangeException
  
  Changes the stroke width of the item's shape to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Node.strokeWidth()
- setTextBrushDefault
  
  void setTextBrushDefault() throws IllegalChangeException
  
  Changes the fill brush of the item's text label to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Node.textBrush()
- setFillLevelIndicationDefault
  
  void setFillLevelIndicationDefault() throws IllegalChangeException
  
  Changes the indication for filling of the item's shape to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Node.fillLevelIndication()
- setFontDefault
  
  void setFontDefault() throws IllegalChangeException
  
  Changes the font of the text label of the item to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Node.font()
- setShapeDefault
  
  void setShapeDefault() throws IllegalChangeException
  
  Changes the appearance of the metabolite node in the diagram to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Node.shape()
- setStrokeStyleDefault
  
  void setStrokeStyleDefault() throws IllegalChangeException
  
  Changes the paint style for the stroke of the item's shape to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Node.strokeStyle()
- setTextStrokeColorDefault
  
  void setTextStrokeColorDefault() throws IllegalChangeException
  
  Changes the color for the stroke of the item's text label to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Node.textStrokeColor()
- setStrokeColorDefault
  
  void setStrokeColorDefault() throws IllegalChangeException
  
  Sets the color for the stroke of the item's shape to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Node.strokeColor()
- setShadowDefault
  
  void setShadowDefault() throws IllegalChangeException
  
  Sets the shadow of the item to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Node.shadow()
- getDiagramItems
  
  List<? extends AbstractBioNodeItem> getDiagramItems()
  
  Specified by:
  
  getDiagramItems in interface AbstractBioNode
  
  Specified by:
  
  getDiagramItems in interface AbstractNode
  
  Specified by:
  
  getDiagramItems in interface AbstractNode
  
  Specified by:
  
  getDiagramItems in interface AbstractVisibleComponent
  
  Specified by:
  
  getDiagramItems in interface AbstractVisibleComponent
- getDiagramItems
  
  List<? extends AbstractBioNodeItem> getDiagramItems(Diagram diagram)
  
  Specified by:
  
  getDiagramItems in interface AbstractBioNode
  
  Specified by:
  
  getDiagramItems in interface AbstractNode
  
  Specified by:
  
  getDiagramItems in interface AbstractNode
  
  Specified by:
  
  getDiagramItems in interface AbstractVisibleComponent
  
  Specified by:
  
  getDiagramItems in interface AbstractVisibleComponent
- inEdges
  
  List<? extends FluxEdge> inEdges()
  
  Returns an unchangeable List of all incoming flux edges of this node.
  
  Specified by:
  
  inEdges in interface AbstractBioNode
  
  Returns:
  
  flux edges
- outEdges
  
  List<? extends FluxEdge> outEdges()
  
  Returns an unchangeable List of all outgoing flux edges of this node.
  
  Specified by:
  
  outEdges in interface AbstractBioNode
  
  Returns:
  
  flux edges
- fluxEdges
  
  List<? extends FluxEdge> fluxEdges()
  
  Specified by:
  
  fluxEdges in interface AbstractBioNode
- effectorEdges
  
  List<? extends EffectorEdge> effectorEdges()
  
  Returns an unchangeable List of all effector edges of this node.
  
  Specified by:
  
  effectorEdges in interface AbstractBioNode
  
  Returns:
  
  effector edges
- toReadOnly
  
  AbstractBioNode toReadOnly()
  
  Specified by:
  
  toReadOnly in interface AbstractModelComponent
  
  Specified by:
  
  toReadOnly in interface AbstractNode
  
  Specified by:
  
  toReadOnly in interface AbstractVisibleComponent
  
  Specified by:
  
  toReadOnly in interface WritableInterface

Interface AbstractBioNode