Uses of Interface omix.plugin.model.writable.Pathway (Omix API)

Packages that use Pathway
Package	Description
omix.plugin.diagram.writable
omix.plugin.model.writable

Uses of Pathway in omix.plugin.diagram.writable

Methods in omix.plugin.diagram.writable that return Pathway
Modifier and Type	Method	Description
`Pathway`	PathwayItem.`modelComponent()`

Methods in omix.plugin.diagram.writable with parameters of type Pathway
Modifier and Type	Method	Description
`LinkItem`	Diagram.`createLink(Pathway pathway)`	Create a new link to given pathway. After creating a new link, it must be explicitly added to the model by `#addComponent(AbstractModelComponent)`.
`PathwayItem`	Diagram.`createPathwayItem(Pathway component)`

Uses of Pathway in omix.plugin.model.writable

Methods in omix.plugin.model.writable that return Pathway
Modifier and Type	Method	Description
`Pathway`	Model.`createPathway(String name)`	Create a new pathway item.
`Pathway`	Model.`createPathway(String namePlainText, String nameRichText)`	Create a new pathway item.
`Pathway`	Model.`getPathway(String name)`	Returns the pathway of the given name if available, otherwise null.
`Pathway`	Link.PathwayLinkAppearance.`pathway()`
`Pathway`	Reaction.`pathway()`	Returns the pathway the reaction belongs to.
`Pathway`	Model.`toWritable(Pathway pathway)`

Methods in omix.plugin.model.writable that return types with arguments of type Pathway
Modifier and Type	Method	Description
`List<? extends Pathway>`	Model.`pathways()`	Returns an unchangeable `List` of all pathway items.

Methods in omix.plugin.model.writable with parameters of type Pathway
Modifier and Type	Method	Description
`Link`	Model.`createLink(Pathway pathway)`	Create a new link to given pathway. After creating a new link, it must be explicitly added to the model by `Model.addComponent(AbstractModelComponent)`.
`Reaction`	Model.`createReaction(String namePlainText, String nameRichText, Pathway pathway)`	Create a new reaction item belonging to the given pathway. After creating a new reaction, it must be explicitly added to the model by `Model.addComponent(AbstractModelComponent)`.
`Reaction`	Model.`createReaction(String name, Pathway pathway)`	Create a new reaction item belonging to the given pathway. After creating a new reaction, it must be explicitly added to the model by `Model.addComponent(AbstractModelComponent)`.