Uses of Interface
omix.plugin.model.writable.Reaction

Packages that use Reaction

Package	Description
omix.plugin.diagram.writable
omix.plugin.model.writable

Uses of Reaction in omix.plugin.diagram.writable

Methods in omix.plugin.diagram.writable that return Reaction

Modifier and Type	Method	Description
Reaction	ReactionItem.modelComponent()

Methods in omix.plugin.diagram.writable with parameters of type Reaction

Modifier and Type	Method	Description
ReactionItem	Diagram.createReactionItem(Reaction component)
ReactionItem	Diagram.createReactionItem(Reaction component, PathwayItem pathway)

Uses of Reaction in omix.plugin.model.writable

Methods in omix.plugin.model.writable that return Reaction

Modifier and Type	Method	Description
Reaction	Model.createReaction(String name)	Create a new reaction item.
Reaction	Model.createReaction(String name, String nameFormat)	Create a new reaction item.
Reaction	Model.createReaction(String namePlainText, String nameRichText, Pathway pathway)	Create a new reaction item belonging to the given pathway. After creating a new reaction, it must be explicitly added to the model by Model.addComponent(AbstractModelComponent).
Reaction	Model.createReaction(String name, Pathway pathway)	Create a new reaction item belonging to the given pathway. After creating a new reaction, it must be explicitly added to the model by Model.addComponent(AbstractModelComponent).
Reaction	EffectorEdge.dst()
Reaction	Model.getReaction(String name)	Returns the reaction nodes of the given name if available, otherwise null.
Reaction	Pathway.getReaction(String name)
Reaction	Model.toWritable(Reaction reaction)

Methods in omix.plugin.model.writable that return types with arguments of type Reaction

Modifier and Type	Method	Description
List<? extends Reaction>	Model.reactions()	Returns an unchangeable List of all reaction nodes.
List<? extends Reaction>	Pathway.reactions()

Methods in omix.plugin.model.writable with parameters of type Reaction

Modifier and Type	Method	Description
LinkEdge	Model.createEffectorEdge(Link src, Reaction dst, double effect)	Creates a new link edge with effector edge appearance between a source link and destination node.
EffectorEdge	Model.createEffectorEdge(Metabolite src, Reaction dst, double effect)	Creates a new effector edge between a source and destination node with the given effect.