All Superinterfaces:: AbstractEdge, AbstractEdge, AbstractItem, AbstractItem, FluxEdge

public interface FluxEdge
extends FluxEdge, AbstractEdge

Method Summary

Modifier and Type	Method	Description
`MarkerShape`	`arrowShape()`	The shape of the edge's arrow.
`double`	`arrowSize()`	The size of the edge's arrow given as multiple of the edge width.
`double`	`coefficient()`	The coefficient of the edge.
`Brush`	`coefficientBrush()`	The paint brush used to display the edge's coefficient.
`DecimalFormat`	`coefficientDecimalFormat()`	The decimal format for the edge's coefficient.
`Font`	`coefficientFont()`	The font used to display the edge's coefficient.
`boolean`	`isCofactor()`	Returns the relation between the connected metabolite and reaction.
`Brush`	`reversibilitySignBrush()`	The paint brush used to display the edge's reversibility sign.
`double`	`reversibilitySignScale()`	The scale of the edge's reversibility sign given as multiple of the edge width (>0).
`void`	`setArrowSize(double arrowSize)`	Changes the arrow size.
`void`	`setBrush(Brush brush)`	Sets the fill brush of the item's shape.
`void`	`setCoefficient(double coefficient)`	Changes the edge coefficient.
`void`	`setCoefficientBrush(Brush brush)`	Changes the brush of the edge's coefficient.
`void`	`setCoefficientFont(Font font)`	Changes the font of the edge's coefficient.
`void`	`setCofactor(boolean isCofactor)`	Changes the cofactor state of the edge.
`void`	`setDefaultArrowSize()`	Changes the arrow size to default.
`void`	`setDefaultBrush()`	Sets the fill brush of the item's shape to default.
`void`	`setDefaultCoefficientBrush()`	Changes the brush of the edge's coefficient to default.
`void`	`setDefaultCoefficientFont()`	Changes the font of the edge's coefficient to default.
`void`	`setDefaultLineStyle()`	Changes the line style of the edge to default.
`void`	`setDefaultLineWidth()`	Changes the line width of the edge to default.
`void`	`setDefaultReversibilitySignBrush()`	Changes the brush of the reversibility sign (if available) to default.
`void`	`setDefaultReversibilitySignScale()`	Changes the scale of the reversibility sign (if available) to default.
`void`	`setDefaultShadow()`	Sets the shadow of the edge to default.
`void`	`setDefaultStrokeColor()`	Sets the color for the stroke of the item's shape to default.
`void`	`setDefaultStrokeStyle()`	Changes the paint style for the stroke of the item's shape to default.
`void`	`setDefaultStrokeWidth()`	Changes the stroke width of the item's shape to default.
`void`	`setDefaultTransparency()`	Changes the transparency of the item's shape to default.
`void`	`setReversibilitySignBrush(Brush brush)`	Changes the brush of the reversibility sign (if available).
`void`	`setReversibilitySignScale(double size)`	Changes the scale of the reversibility sign (if available).

Methods inherited from interface omix.plugin.motifstamp.writable.AbstractEdge

blur, lineStyle, lineWidth, setDockingPositions, setLineStyle, setLineWidth, setShadow, setStrokeColor, setStrokeStyle, setStrokeWidth, setTransparency, shadow, strokeColor, strokeStyle, strokeWidth, transparency

Method Details
- setBrush
  
  void setBrush(@NonNull Brush brush) throws IllegalChangeException
  
  Sets the fill brush of the item's shape.
  
  Parameters:
  
  brush - the new brush
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  FluxEdge.brush()
- setCoefficientFont
  
  void setCoefficientFont(@NonNull Font font) throws IllegalChangeException
  
  Changes the font of the edge's coefficient.
  
  Parameters:
  
  font -
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  FluxEdge.coefficientFont()
- setCoefficientBrush
  
  void setCoefficientBrush(@NonNull Brush brush) throws IllegalChangeException
  
  Changes the brush of the edge's coefficient.
  
  Parameters:
  
  brush -
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  FluxEdge.coefficientBrush()
- setCofactor
  
  void setCofactor(boolean isCofactor) throws IllegalChangeException
  
  Changes the cofactor state of the edge.
  
  Parameters:
  
  isCofactor -
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  FluxEdge.isCofactor()
- setArrowSize
  
  void setArrowSize(double arrowSize) throws IllegalChangeException
  
  Changes the arrow size.
  
  Parameters:
  
  arrowSize -
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  FluxEdge.arrowSize()
- setReversibilitySignScale
  
  void setReversibilitySignScale(double size) throws IllegalChangeException
  
  Changes the scale of the reversibility sign (if available).
  
  Parameters:
  
  size -
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  FluxEdge.reversibilitySignScale()
- setReversibilitySignBrush
  
  void setReversibilitySignBrush(@NonNull Brush brush) throws IllegalChangeException
  
  Changes the brush of the reversibility sign (if available).
  
  Parameters:
  
  brush -
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  FluxEdge.reversibilitySignBrush()
- setCoefficient
  
  void setCoefficient(double coefficient) throws IllegalChangeException
  
  Changes the edge coefficient.
  
  Parameters:
  
  coefficient -
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  FluxEdge.coefficient()
- setDefaultBrush
  
  void setDefaultBrush() throws IllegalChangeException
  
  Sets the fill brush of the item's shape to default.
  
  Parameters:
  
  brush - the new brush
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  FluxEdge.brush()
- setDefaultStrokeWidth
  
  void setDefaultStrokeWidth() throws IllegalChangeException
  
  Changes the stroke width of the item's shape to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  EffectorEdge.strokeWidth()
- setDefaultLineWidth
  
  void setDefaultLineWidth() throws IllegalChangeException
  
  Changes the line width of the edge to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  EffectorEdge.lineWidth()
- setDefaultCoefficientFont
  
  void setDefaultCoefficientFont() throws IllegalChangeException
  
  Changes the font of the edge's coefficient to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  FluxEdge.coefficientFont()
- setDefaultCoefficientBrush
  
  void setDefaultCoefficientBrush() throws IllegalChangeException
  
  Changes the brush of the edge's coefficient to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  FluxEdge.coefficientBrush()
- setDefaultStrokeStyle
  
  void setDefaultStrokeStyle() throws IllegalChangeException
  
  Changes the paint style for the stroke of the item's shape to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Edge.strokeStyle()
- setDefaultLineStyle
  
  void setDefaultLineStyle() throws IllegalChangeException
  
  Changes the line style of the edge to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Edge.lineStyle()
- setDefaultStrokeColor
  
  void setDefaultStrokeColor() throws IllegalChangeException
  
  Sets the color for the stroke of the item's shape to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Edge.strokeColor()
- setDefaultShadow
  
  void setDefaultShadow() throws IllegalChangeException
  
  Sets the shadow of the edge to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  Edge.shadow()
- setDefaultArrowSize
  
  void setDefaultArrowSize() throws IllegalChangeException
  
  Changes the arrow size to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  FluxEdge.arrowSize()
- setDefaultReversibilitySignScale
  
  void setDefaultReversibilitySignScale() throws IllegalChangeException
  
  Changes the scale of the reversibility sign (if available) to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  FluxEdge.reversibilitySignScale()
- setDefaultReversibilitySignBrush
  
  void setDefaultReversibilitySignBrush() throws IllegalChangeException
  
  Changes the brush of the reversibility sign (if available) to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  FluxEdge.reversibilitySignBrush()
- setDefaultTransparency
  
  void setDefaultTransparency() throws IllegalChangeException
  
  Changes the transparency of the item's shape to default.
  
  Throws:
  
  IllegalChangeException
  
  See Also:
  
  EffectorEdge.transparency()
- arrowSize
  
  double arrowSize()
  
  The size of the edge's arrow given as multiple of the edge width. Minimal value is 1.0.
- arrowShape
  
  MarkerShape arrowShape()
  
  The shape of the edge's arrow.
- reversibilitySignBrush
  
  Brush reversibilitySignBrush()
  
  The paint brush used to display the edge's reversibility sign.
- reversibilitySignScale
  
  double reversibilitySignScale()
  
  The scale of the edge's reversibility sign given as multiple of the edge width (>0).
- coefficientDecimalFormat
  
  DecimalFormat coefficientDecimalFormat()
  
  The decimal format for the edge's coefficient.
- coefficientBrush
  
  Brush coefficientBrush()
  
  The paint brush used to display the edge's coefficient.
- coefficientFont
  
  Font coefficientFont()
  
  The font used to display the edge's coefficient.
- coefficient
  
  double coefficient()
  
  The coefficient of the edge.
- isCofactor
  
  boolean isCofactor()
  
  Returns the relation between the connected metabolite and reaction.
  
  Returns:
  
  cofactor state

Interface FluxEdge

Method Summary

Methods inherited from interface omix.plugin.motifstamp.writable.AbstractEdge

Method Details