Module omix.api

Package omix.lang.model

Interface FluxEdge

All Superinterfaces:

Component, Edge, Item

@OVLExtensible
public interface FluxEdge
extends Edge

Represents a flux edge in the network diagram. This Java interface represents a FluxEdge in OVL. It contain all methods available in OVL. The static fields in this interface declaration are public non-static instance fields in OVL. They can be read and written from OVL code.

Author:

Dr. Peter Droste, Omix Visualization

Method Summary

Modifier and Type	Method	Description
MarkerShape	arrowShape()	The shape of the edge's arrow.
double	arrowSize()	The size of the edge's arrow given as multiple of the edge width.
double	blur()	The blur of the edge.
Brush	brush()	The fill brush of the edge and arrows.
double	coefficient()	The coefficient of the edge.
Brush	coefficientBrush()	The paint brush used to display the edge's coefficient.
DecimalFormat	coefficientDecimalFormat()	The decimal format for the edge's coefficient.
Font	coefficientFont()	The font used to display the edge's coefficient.
BioNode	dst()	returns the destination node this edge is connected with.
boolean	isCofactor()	Returns the relation between the connected metabolite and reaction.
StrokeStyle	lineStyle()	The style of the edge.
double	lineWidth()	The width of the edge.
Brush	reversibilitySignBrush()	The paint brush used to display the edge's reversibility sign.
double	reversibilitySignScale()	The scale of the edge's reversibility sign given as multiple of the edge width (>0).
Shadow	shadow()	The shadow of the edge.
BioNode	src()	returns the source node this edge is connected with.
Color	strokeColor()	The color for the stroke of the edge.
StrokeStyle	strokeStyle()	The paint style for the stroke of the edge.
double	strokeWidth()	The stroke width of the edge given.
double	transparency()	The transparency of the edge.

Methods inherited from interface omix.lang.model.Component

customPropertyNames, getCustomProperty, id, onload, setCustomProperty, setTmpCustomProperty

Methods inherited from interface omix.lang.model.Edge

getIdentifier, isHidden, model, network

Method Details

strokeStyle

@OVLField @OVLFallbackField StrokeStyle strokeStyle()

The paint style for the stroke of the edge.

Specified by:

strokeStyle in interface Edge

shadow

@OVLField @OVLFallbackField Shadow shadow()

The shadow of the edge.

Specified by:

shadow in interface Edge

strokeColor

@OVLField @OVLFallbackField Color strokeColor()

The color for the stroke of the edge.

Specified by:

strokeColor in interface Edge

lineStyle

@OVLField @OVLFallbackField StrokeStyle lineStyle()

The style of the edge.

Specified by:

lineStyle in interface Edge

lineWidth

@OVLField @OVLFallbackField double lineWidth()

The width of the edge.

Specified by:

lineWidth in interface Edge

arrowSize

@OVLField @OVLFallbackField double arrowSize()

The size of the edge's arrow given as multiple of the edge width. Minimal value is 1.0.

arrowShape

@OVLField @OVLFallbackField MarkerShape arrowShape()

The shape of the edge's arrow.

reversibilitySignBrush

@OVLField @OVLFallbackField Brush reversibilitySignBrush()

The paint brush used to display the edge's reversibility sign.

Since:

Omix 1.8.0

reversibilitySignScale

@OVLField @OVLFallbackField double reversibilitySignScale()

The scale of the edge's reversibility sign given as multiple of the edge width (>0).

Since:

Omix 1.4.23

coefficientDecimalFormat

@OVLField @OVLFallbackField DecimalFormat coefficientDecimalFormat()

The decimal format for the edge's coefficient.

Since:

Omix 1.5.9

coefficientBrush

@OVLField @OVLFallbackField Brush coefficientBrush()

The paint brush used to display the edge's coefficient.

Since:

Omix 1.8.0

coefficientFont

@OVLField @OVLFallbackField Font coefficientFont()

The font used to display the edge's coefficient.

Since:

Omix 1.4.23

strokeWidth

@OVLField @OVLFallbackField double strokeWidth()

The stroke width of the edge given.

Specified by:

strokeWidth in interface Edge

brush

@OVLField @OVLFallbackField Brush brush()

The fill brush of the edge and arrows.

Since:

Omix 1.8.0

blur

@OVLField @OVLFallbackField double blur()

The blur of the edge.

Specified by:

blur in interface Edge

Since:

Omix 1.5.13

transparency

@OVLField @OVLFallbackField double transparency()

The transparency of the edge.

Specified by:

transparency in interface Edge

Since:

Omix 1.5.13

coefficient

@OVLField double coefficient()

The coefficient of the edge.

isCofactor

boolean isCofactor()

Returns the relation between the connected metabolite and reaction.

Returns:

cofactor state

src

BioNode src()

returns the source node this edge is connected with.

Specified by:

src in interface Edge

Returns:

source node

dst

BioNode dst()

returns the destination node this edge is connected with.

Specified by:

dst in interface Edge

Returns:

destination node