All Superinterfaces:: MotifStamp

public interface MotifStamp
extends MotifStamp

Method Summary

Modifier and Type	Method	Description
`void`	`addItem(AbstractItem item)`
`default Arc`	`createArc(double x, double y, double radius, double startAngle, double length)`	Create an arc with the given center, radius, start angle and length.
`Arc`	`createArc(double x, double y, double radiusX, double radiusY, double startAngle, double length)`	Create an arc with the given center, radiusX, radiusY, start angle and length.
`BezierPoint`	`createBezierPoint(double x, double y)`	Create a bezier controlpoint.
`FluxEdge`	`createCofactorEdgeFrom(Metabolite src, double coefficient, List<AbstractCurvePoint> points)`
`default FluxEdge`	`createCofactorEdgeFrom(Metabolite src, double coefficient, AbstractCurvePoint... points)`
`default FluxEdge`	`createCofactorEdgeFrom(Metabolite src, List<AbstractCurvePoint> points)`
`default FluxEdge`	`createCofactorEdgeFrom(Metabolite src, AbstractCurvePoint... points)`
`FluxEdge`	`createCofactorEdgeTo(Metabolite dst, double coefficient, List<AbstractCurvePoint> points)`
`default FluxEdge`	`createCofactorEdgeTo(Metabolite dst, double coefficient, AbstractCurvePoint... points)`
`default FluxEdge`	`createCofactorEdgeTo(Metabolite dst, List<AbstractCurvePoint> points)`
`default FluxEdge`	`createCofactorEdgeTo(Metabolite dst, AbstractCurvePoint... points)`
`EffectorEdge`	`createEffectorEdge(Metabolite src, double effect, List<AbstractCurvePoint> points)`
`default EffectorEdge`	`createEffectorEdge(Metabolite src, double effect, AbstractCurvePoint... points)`
`FluxEdge`	`createFluxEdgeFrom(Metabolite src, double coefficient, List<AbstractCurvePoint> points)`
`default FluxEdge`	`createFluxEdgeFrom(Metabolite src, double coefficient, AbstractCurvePoint... points)`
`default FluxEdge`	`createFluxEdgeFrom(Metabolite src, List<AbstractCurvePoint> points)`
`default FluxEdge`	`createFluxEdgeFrom(Metabolite src, AbstractCurvePoint... points)`
`FluxEdge`	`createFluxEdgeTo(Metabolite dst, double coefficient, List<AbstractCurvePoint> points)`
`default FluxEdge`	`createFluxEdgeTo(Metabolite dst, double coefficient, AbstractCurvePoint... points)`
`default FluxEdge`	`createFluxEdgeTo(Metabolite dst, List<AbstractCurvePoint> points)`
`default FluxEdge`	`createFluxEdgeTo(Metabolite dst, AbstractCurvePoint... points)`
`GraphicsEdge`	`createGraphicsEdgeFrom(GraphicsNode src, List<AbstractCurvePoint> points)`
`default GraphicsEdge`	`createGraphicsEdgeFrom(GraphicsNode src, AbstractCurvePoint... points)`
`GraphicsEdge`	`createGraphicsEdgeFrom(Metabolite src, List<AbstractCurvePoint> points)`
`default GraphicsEdge`	`createGraphicsEdgeFrom(Metabolite src, AbstractCurvePoint... points)`
`GraphicsEdge`	`createGraphicsEdgeTo(GraphicsNode src, List<AbstractCurvePoint> points)`
`default GraphicsEdge`	`createGraphicsEdgeTo(GraphicsNode dst, AbstractCurvePoint... points)`
`GraphicsEdge`	`createGraphicsEdgeTo(Metabolite src, List<AbstractCurvePoint> points)`
`default GraphicsEdge`	`createGraphicsEdgeTo(Metabolite dst, AbstractCurvePoint... points)`
`default GraphicsNode`	`createGraphicsNode()`
`GraphicsNode`	`createGraphicsNode(String identifier)`
`default Metabolite`	`createMetabolite(String name)`
`Metabolite`	`createMetabolite(String namePlainText, String nameRichText)`
`Separator`	`createSeparator()`
`default SplinePoint`	`createSplinePoint(double x, double y)`	Create a spline point.
`SplinePoint`	`createSplinePoint(double x, double y, Smoothness smoothness)`	Create a spline point with the given smoothness.
`List<? extends EffectorEdge>`	`effectorEdges()`
`List<? extends FluxEdge>`	`fluxEdges()`
`List<? extends GraphicsEdge>`	`graphicsEdges()`
`List<? extends GraphicsNode>`	`graphicsNodes()`
`List<? extends Metabolite>`	`metabolites()`
`void`	`setIdentifier(String identifier)`

Method Details
- createMetabolite
  
  default Metabolite createMetabolite(String name)
- createMetabolite
  
  Metabolite createMetabolite(String namePlainText, String nameRichText)
- createGraphicsNode
  
  default GraphicsNode createGraphicsNode()
- createGraphicsNode
  
  GraphicsNode createGraphicsNode(String identifier)
- createFluxEdgeFrom
  
  default FluxEdge createFluxEdgeFrom(Metabolite src, AbstractCurvePoint... points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createFluxEdgeTo
  
  default FluxEdge createFluxEdgeTo(Metabolite dst, AbstractCurvePoint... points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createCofactorEdgeFrom
  
  default FluxEdge createCofactorEdgeFrom(Metabolite src, AbstractCurvePoint... points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createCofactorEdgeTo
  
  default FluxEdge createCofactorEdgeTo(Metabolite dst, AbstractCurvePoint... points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createFluxEdgeFrom
  
  default FluxEdge createFluxEdgeFrom(Metabolite src, List<AbstractCurvePoint> points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createFluxEdgeTo
  
  default FluxEdge createFluxEdgeTo(Metabolite dst, List<AbstractCurvePoint> points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createCofactorEdgeFrom
  
  default FluxEdge createCofactorEdgeFrom(Metabolite src, List<AbstractCurvePoint> points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createCofactorEdgeTo
  
  default FluxEdge createCofactorEdgeTo(Metabolite dst, List<AbstractCurvePoint> points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createFluxEdgeFrom
  
  default FluxEdge createFluxEdgeFrom(Metabolite src, double coefficient, AbstractCurvePoint... points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createFluxEdgeTo
  
  default FluxEdge createFluxEdgeTo(Metabolite dst, double coefficient, AbstractCurvePoint... points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createCofactorEdgeFrom
  
  default FluxEdge createCofactorEdgeFrom(Metabolite src, double coefficient, AbstractCurvePoint... points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createCofactorEdgeTo
  
  default FluxEdge createCofactorEdgeTo(Metabolite dst, double coefficient, AbstractCurvePoint... points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createGraphicsEdgeFrom
  
  default GraphicsEdge createGraphicsEdgeFrom(GraphicsNode src, AbstractCurvePoint... points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createGraphicsEdgeFrom
  
  default GraphicsEdge createGraphicsEdgeFrom(Metabolite src, AbstractCurvePoint... points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createGraphicsEdgeTo
  
  default GraphicsEdge createGraphicsEdgeTo(GraphicsNode dst, AbstractCurvePoint... points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createGraphicsEdgeTo
  
  default GraphicsEdge createGraphicsEdgeTo(Metabolite dst, AbstractCurvePoint... points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createEffectorEdge
  
  default EffectorEdge createEffectorEdge(Metabolite src, double effect, AbstractCurvePoint... points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createFluxEdgeFrom
  
  FluxEdge createFluxEdgeFrom(Metabolite src, double coefficient, List<AbstractCurvePoint> points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createFluxEdgeTo
  
  FluxEdge createFluxEdgeTo(Metabolite dst, double coefficient, List<AbstractCurvePoint> points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createCofactorEdgeFrom
  
  FluxEdge createCofactorEdgeFrom(Metabolite src, double coefficient, List<AbstractCurvePoint> points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createCofactorEdgeTo
  
  FluxEdge createCofactorEdgeTo(Metabolite dst, double coefficient, List<AbstractCurvePoint> points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createGraphicsEdgeFrom
  
  GraphicsEdge createGraphicsEdgeFrom(GraphicsNode src, List<AbstractCurvePoint> points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createGraphicsEdgeFrom
  
  GraphicsEdge createGraphicsEdgeFrom(Metabolite src, List<AbstractCurvePoint> points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createGraphicsEdgeTo
  
  GraphicsEdge createGraphicsEdgeTo(GraphicsNode src, List<AbstractCurvePoint> points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createGraphicsEdgeTo
  
  GraphicsEdge createGraphicsEdgeTo(Metabolite src, List<AbstractCurvePoint> points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- createEffectorEdge
  
  EffectorEdge createEffectorEdge(Metabolite src, double effect, List<AbstractCurvePoint> points) throws IllegalComponentException
  
  Throws:
  
  IllegalComponentException
- addItem
  
  void addItem(AbstractItem item) throws ComponentExistsException, IllegalComponentException, IllegalStateException
  
  Throws:
  
  ComponentExistsException
  
  IllegalComponentException
  
  IllegalStateException
- graphicsNodes
  
  List<? extends GraphicsNode> graphicsNodes()
  
  Specified by:
  
  graphicsNodes in interface MotifStamp
- metabolites
  
  List<? extends Metabolite> metabolites()
  
  Specified by:
  
  metabolites in interface MotifStamp
- graphicsEdges
  
  List<? extends GraphicsEdge> graphicsEdges()
  
  Specified by:
  
  graphicsEdges in interface MotifStamp
- fluxEdges
  
  List<? extends FluxEdge> fluxEdges()
  
  Specified by:
  
  fluxEdges in interface MotifStamp
- effectorEdges
  
  List<? extends EffectorEdge> effectorEdges()
  
  Specified by:
  
  effectorEdges in interface MotifStamp
- setIdentifier
  
  void setIdentifier(String identifier) throws ComponentExistsException, IllegalChangeException
  
  Throws:
  
  ComponentExistsException
  
  IllegalChangeException
- createSeparator
  
  Separator createSeparator()
- createBezierPoint
  
  BezierPoint createBezierPoint(double x, double y)
  
  Create a bezier controlpoint.
  
  Parameters:
  
  x -
  
  y -
  
  Returns:
  
  bezier controlpoint.
- createSplinePoint
  
  default SplinePoint createSplinePoint(double x, double y)
  
  Create a spline point.
  
  Parameters:
  
  x -
  
  y -
  
  Returns:
  
  spline point
- createSplinePoint
  
  SplinePoint createSplinePoint(double x, double y, Smoothness smoothness)
  
  Create a spline point with the given smoothness.
  
  Parameters:
  
  x -
  
  y -
  
  smoothness -
  
  Returns:
  
  spline point
- createArc
  
  default Arc createArc(double x, double y, double radius, double startAngle, double length)
  
  Create an arc with the given center, radius, start angle and length.
  
  Parameters:
  
  x -
  
  y -
  
  radius - (must not be 0)
  
  startAngle - in degrees
  
  length - in degrees (must not be 0)
  
  Returns:
  
  arc
- createArc
  
  Arc createArc(double x, double y, double radiusX, double radiusY, double startAngle, double length)
  
  Create an arc with the given center, radiusX, radiusY, start angle and length.
  
  Parameters:
  
  x -
  
  y -
  
  radiusX - (must not be 0)
  
  radiusY - (must not be 0)
  
  startAngle - in degrees
  
  length - in degrees (must not be 0)
  
  Returns:
  
  arc

Interface MotifStamp

Method Summary

Method Details