Uses of Class
omix.plugin.util.ComponentExistsException

Packages that use ComponentExistsException

Package	Description
omix.plugin.diagram.writable
omix.plugin.model.writable
omix.plugin.motifstamp.writable
omix.util.io	This package contains classes for file input and output which can be used in plugin development.

Uses of ComponentExistsException in omix.plugin.diagram.writable

Methods in omix.plugin.diagram.writable that throw ComponentExistsException

Modifier and Type	Method	Description
void	Diagram.addItem(AbstractItem item)	Created diagram items have to be inserted into the metabolic network before taking any effect. OVL definitions do not become part of a diagram component until the item is added to the diagram. After adding a MetaboliteItem or Metabolite to the diagram, a MetaboliteType is simultaneously added to the Model.
void	Diagram.addItem(Guideline item)
void	Diagram.addItem(PatternItem item)
void	Diagram.removeItem(AbstractItem item)
void	Diagram.removeItem(Guideline item)
void	Diagram.removeItem(PatternItem item)
void	Clipping.setIdentifier(String identifier)
void	Comment.setIdentifier(String identifier)	Changes identifier of the item.
void	Legend.setIdentifier(String identifier)	Changes identifier of the item.

Uses of ComponentExistsException in omix.plugin.model.writable

Methods in omix.plugin.model.writable that throw ComponentExistsException

Modifier and Type	Method	Description
void	Model.addComponent(AbstractModelComponent item)	Created diagram items have to be inserted into the metabolic network before taking any effect. OVL definitions do not become part of a diagram component until the item is added to the diagram. After adding a Metabolite or Metabolite to the diagram, a ModelMetaboliteType is simultaneously added to the Model.
CustomShape	Model.addCustomShape(String name, List<? extends AbstractCurvePoint> points)	Creates a new custom shape available for nodes or edge markers.
void	Model.addDiagram(Diagram diagram)
void	Model.addMotifStamp(MotifStamp motifStamp)
Diagram	Model.createDiagram(String identifier)	Creates a new diagram.
void	Model.removeComponent(AbstractModelComponent item)
void	Model.removeDiagram(Diagram diagram)
void	Model.removeMotifStamp(MotifStamp motifStamp)
void	Compartment.setIdentifier(String identifier)	Changes identifier of the item.
void	GraphicsBox.setIdentifier(String identifier)	Changes identifier of the item.
void	GraphicsNode.setIdentifier(String identifier)
void	GraphicsPath.setIdentifier(String identifier)	Changes identifier of the item.
void	Link.setIdentifier(String identifier)
void	MetaboliteType.setIdentifier(String identifier)	Changes identifier of the item.
void	Pathway.setIdentifier(String identifier)	Changes identifier of the item.
void	Reaction.setIdentifier(String identifier)	Changes identifier of the item.

Uses of ComponentExistsException in omix.plugin.motifstamp.writable

Methods in omix.plugin.motifstamp.writable that throw ComponentExistsException

Modifier and Type	Method	Description
void	MotifStamp.addItem(AbstractItem item)
void	MotifStamp.setIdentifier(String identifier)

Uses of ComponentExistsException in omix.util.io

Methods in omix.util.io that throw ComponentExistsException

Modifier and Type	Method	Description
protected abstract void	AbstractModelIODomHandler.readFromDom(String suffix, URLConnection connection, Model model, InputUtilities utilities)	Reads an XML file by using DOM.
protected void	StandardModelIODomHandler.readFromDom(String suffix, URLConnection connection, Model model, InputUtilities utilities)	Manages the parsing of a XML file into a Document.
protected abstract void	AbstractDomReader.readOmixModel(Model model, Element domElement)	This method assembles the model according the content inside the given DOM element.