Module omix.api

Package omix.lang.model

This package contains all network components as OVL extendable types.
  • Interface Summary 
    Interface Description
    BioNode
    This type generalizes all common attributes of metabolite and reaction.
    This Java interface represents a MetNode in OVL.
    Comment Deprecated.
    Comment.Reply  
    Compartment
    Represents a compartment in the metabolic network diagram.
    Component
    Superclass of all model components in OVL.
    Edge
    Superclass of all edges in Omix.
    EffectorEdge
    Represents an effector edge in the network diagram.
    FluxEdge
    Represents a flux edge in the network diagram.
    GraphicsBox
    Represents a graphical box in the diagram.
    GraphicsEdge
    Represents a custom edge in the network diagram.
    GraphicsItem Deprecated.
    GraphicsNode
    This type represents custom nodes in OVL.
    GraphicsPath
    Represents a graphical path in the diagram.
    Item Deprecated.
    Link
    This type represents a link node in OVL.
    LinkEdge
    Represents a custom edge in the network diagram.
    MetabolicNetwork Deprecated.
    Metabolite
    Represents all instances of a metabolite pool in the metabolic network diagram.
    MetaboliteType
    This class represents the type of metabolites in different compartments.
    MetNode Deprecated.
    Model
    This class represents the network model.
    Network Deprecated.
    Node
    Superclass of all nodes in Omix.
    Pathway
    Represents a pathway in the metabolic network diagram.
    Reaction
    This type represents reactions in OVL.