All Superinterfaces:: Component, Item, MetNode, Node

All Known Subinterfaces:: Metabolite, Reaction

public interface BioNode
extends Node, MetNode

This type generalizes all common attributes of metabolite and reaction.
This Java interface represents a MetNode in OVL. It contain all methods available in OVL. The static fields in this interface declaration are public non-static instance fields in OVL. They can be read and written from OVL code.

Author:: Dr. Peter Droste, Omix Visualization

Method Summary

Modifier and Type	Method	Description
`double`	`blur()`	The blur of the node.
`boolean`	`collapsed()`	Collapsed-state of the network component.
`List<? extends EffectorEdge>`	`effectorEdges()`	Returns an unchangeable `List` of all effector edges of this node.
`double`	`fillLevel()`	The filling level of the item's shape given as percentage value.
`FillLevelIndication`	`fillLevelIndication()`	The indication for filling of the item's shape.
`Font`	`font()`	The font of the text label of the item.
`default String`	`getName()`	Deprecated.
`Set<? extends PublicIdentifier>`	`getPublicIdentifiers()`	Returns the components public identifiers
`List<? extends FluxEdge>`	`inEdges()`	Returns an unchangeable `List` of all incoming flux edges of this node.
`List<? extends FluxEdge>`	`outEdges()`	Returns an unchangeable `List` of all outgoing flux edges of this node.
`Paint`	`paint()`	The fill appearance of the item's shape.
`double`	`scale()`	The scale factor the node is displayed with.
`Shadow`	`shadow()`	The shadow of the item.
`Shape`	`shape()`	The appearance of the metabolite node in the diagram.
`Color`	`strokeColor()`	The color for the stroke of the item's shape.
`StrokeStyle`	`strokeStyle()`	The paint style for the stroke of the item's shape.
`double`	`strokeWidth()`	The stroke width of the item's shape.
`List<String>`	`synonyms()`	Returns the synonyms of the item.
`Brush`	`textBrush()`	The fill brush of the item's text label.
`Color`	`textStrokeColor()`	The color for the stroke of the item's text label.
`double`	`textStrokeWidth()`	The stroke width of the item's text label.
`double`	`transparency()`	The transparency of the node.

Methods inherited from interface omix.lang.model.Component

customPropertyNames, getCustomProperty, getIdentifier, id, onload, setCustomProperty, setTmpCustomProperty

Methods inherited from interface omix.lang.model.Node

comments, getComment, graphicsEdges, hidden, linkEdges, model, network

Method Details
- getName
  
  @Deprecated(since="Omix 2.0") @ReplacedBy("property \"id\"") default String getName()
  
  Deprecated.
  
  Returns the name of the item.
  
  Specified by:
  
  getName in interface MetNode
  
  Returns:
  
  name
- synonyms
  
  @OVLField List<String> synonyms()
  
  Returns the synonyms of the item.
  
  Specified by:
  
  synonyms in interface MetNode
  
  Returns:
  
  synonyms
  
  Since:
  
  Omix 1.9.0
- getPublicIdentifiers
  
  Set<? extends PublicIdentifier> getPublicIdentifiers()
  
  Returns the components public identifiers
  
  Specified by:
  
  getPublicIdentifiers in interface MetNode
  
  Returns:
  
  set of public identifiers
  
  Since:
  
  Omix 1.9.0
- strokeWidth
  
  @OVLField @OVLFallbackField double strokeWidth()
  
  The stroke width of the item's shape.
  
  Specified by:
  
  strokeWidth in interface MetNode
  
  Specified by:
  
  strokeWidth in interface Node
- textStrokeWidth
  
  @OVLField @OVLFallbackField double textStrokeWidth()
  
  The stroke width of the item's text label.
  
  Specified by:
  
  textStrokeWidth in interface MetNode
  
  Specified by:
  
  textStrokeWidth in interface Node
- scale
  
  @OVLField @OVLFallbackField double scale()
  
  The scale factor the node is displayed with. Values less than 1.0 decreases the node's size. Values greater than 1.0 increases its size.
  
  Specified by:
  
  scale in interface MetNode
  
  Specified by:
  
  scale in interface Node
- fillLevel
  
  @OVLField @OVLFallbackField double fillLevel()
  
  The filling level of the item's shape given as percentage value.
  
  Specified by:
  
  fillLevel in interface MetNode
  
  Specified by:
  
  fillLevel in interface Node
- blur
  
  @OVLField @OVLFallbackField double blur()
  
  The blur of the node.
  
  Specified by:
  
  blur in interface MetNode
  
  Specified by:
  
  blur in interface Node
  
  Since:
  
  Omix 1.5.13
- transparency
  
  @OVLField @OVLFallbackField double transparency()
  
  The transparency of the node.
  
  Specified by:
  
  transparency in interface MetNode
  
  Specified by:
  
  transparency in interface Node
  
  Since:
  
  Omix 1.5.13
- collapsed
  
  @OVLField @OVLFallbackField boolean collapsed()
  Collapsed-state of the network component. Possible values:
  
  true - the component is forced to be collapsed even if the components are shown by default.
  
  false - the component is forced to be visible even if the components are hidden by default.
  
  null - the component is visible or collapsed dependent on the model settings.
  Specified by:
  
  collapsed in interface MetNode
  
  Specified by:
  
  collapsed in interface Node
  
  Returns:
  
  collapsed
  
  Since:
  
  Omix 1.9.0
- paint
  
  @OVLField @OVLFallbackField Paint paint()
  
  The fill appearance of the item's shape.
  
  Specified by:
  
  paint in interface MetNode
  
  Specified by:
  
  paint in interface Node
- shadow
  
  @OVLField @OVLFallbackField Shadow shadow()
  
  The shadow of the item.
  
  Specified by:
  
  shadow in interface MetNode
  
  Specified by:
  
  shadow in interface Node
- strokeColor
  
  @OVLField @OVLFallbackField Color strokeColor()
  
  The color for the stroke of the item's shape.
  
  Specified by:
  
  strokeColor in interface MetNode
  
  Specified by:
  
  strokeColor in interface Node
- textStrokeColor
  
  @OVLField @OVLFallbackField Color textStrokeColor()
  
  The color for the stroke of the item's text label.
  
  Specified by:
  
  textStrokeColor in interface MetNode
  
  Specified by:
  
  textStrokeColor in interface Node
- strokeStyle
  
  @OVLField @OVLFallbackField StrokeStyle strokeStyle()
  
  The paint style for the stroke of the item's shape.
  
  Specified by:
  
  strokeStyle in interface MetNode
  
  Specified by:
  
  strokeStyle in interface Node
- shape
  
  @OVLField @OVLFallbackField Shape shape()
  
  The appearance of the metabolite node in the diagram.
  
  Specified by:
  
  shape in interface MetNode
  
  Specified by:
  
  shape in interface Node
- font
  
  @OVLField @OVLFallbackField Font font()
  
  The font of the text label of the item.
  
  Specified by:
  
  font in interface MetNode
  
  Specified by:
  
  font in interface Node
- fillLevelIndication
  
  @OVLField @OVLFallbackField FillLevelIndication fillLevelIndication()
  
  The indication for filling of the item's shape.
  
  Specified by:
  
  fillLevelIndication in interface MetNode
  
  Specified by:
  
  fillLevelIndication in interface Node
- textBrush
  
  @OVLField @OVLFallbackField Brush textBrush()
  
  The fill brush of the item's text label.
  
  Specified by:
  
  textBrush in interface MetNode
  
  Specified by:
  
  textBrush in interface Node
  
  Since:
  
  Omix 1.8.0
- inEdges
  
  List<? extends FluxEdge> inEdges()
  
  Returns an unchangeable List of all incoming flux edges of this node.
  
  Specified by:
  
  inEdges in interface MetNode
  
  Returns:
  
  flux edges
- outEdges
  
  List<? extends FluxEdge> outEdges()
  
  Returns an unchangeable List of all outgoing flux edges of this node.
  
  Specified by:
  
  outEdges in interface MetNode
  
  Returns:
  
  flux edges
- effectorEdges
  
  List<? extends EffectorEdge> effectorEdges()
  
  Returns an unchangeable List of all effector edges of this node.
  
  Specified by:
  
  effectorEdges in interface MetNode
  
  Returns:
  
  effector edges

Interface BioNode

Method Summary

Methods inherited from interface omix.lang.model.Component

Methods inherited from interface omix.lang.model.Node

Method Details