Uses of Interface
omix.plugin.diagram.writable.ReactionItem
| Package | Description |
|---|---|
| omix.plugin.diagram.writable | |
| omix.plugin.io |
This package contains interfaces allowing to realize file input output operations.
|
| omix.plugin.model.writable |
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Uses of ReactionItem in omix.plugin.diagram.writable
Methods in omix.plugin.diagram.writable that return ReactionItem Modifier and Type Method Description ReactionItemDiagram. createReaction(String name)Create a new reaction item.ReactionItemDiagram. createReaction(String name, String nameFormat)Create a new reaction item.ReactionItemDiagram. createReaction(String namePlainText, String nameRichText, PathwayItem pathway)Create a new reaction item belonging to the given pathway.
After creating a new reaction, it must be explicitly added to the model byDiagram.addItem(omix.plugin.diagram.writable.AbstractItem).ReactionItemDiagram. createReaction(String name, PathwayItem pathway)Create a new reaction item belonging to the given pathway.
After creating a new reaction, it must be explicitly added to the model byDiagram.addItem(omix.plugin.diagram.writable.AbstractItem).ReactionItemDiagram. createReactionItem(Reaction component)ReactionItemDiagram. createReactionItem(Reaction component, PathwayItem pathway)ReactionItemDiagram. toWritable(ReactionItem reaction)Methods in omix.plugin.diagram.writable that return types with arguments of type ReactionItem Modifier and Type Method Description List<? extends ReactionItem>PathwayItem. getReactions(String identifier)List<? extends ReactionItem>Diagram. reactions()Returns an unchangeableListof all reaction nodes.List<? extends ReactionItem>PathwayItem. reactions()Methods in omix.plugin.diagram.writable with parameters of type ReactionItem Modifier and Type Method Description LinkEdgeItemDiagram. createEffectorEdge(LinkItem src, ReactionItem dst, double effect, List<? extends AbstractCurvePoint> points)Creates a new link edge with effector edge appearance between a link and destination node.default LinkEdgeItemDiagram. createEffectorEdge(LinkItem src, ReactionItem dst, double effect, AbstractCurvePoint... points)Creates a new link edge with effector edge appearance between a link and destination node.EffectorEdgeItemDiagram. createEffectorEdge(MetaboliteItem src, ReactionItem dst, double effect, List<? extends AbstractCurvePoint> points)Creates a new effector edge between a source and destination node with the given effect.default EffectorEdgeItemDiagram. createEffectorEdge(MetaboliteItem src, ReactionItem dst, double effect, AbstractCurvePoint... points)Creates a new effector edge between a source and destination node with the given effect.EffectorEdgeItemDiagram. createEffectorEdgeItem(EffectorEdge edge, MetaboliteItem src, ReactionItem dst, List<? extends AbstractCurvePoint> points)default EffectorEdgeItemDiagram. createEffectorEdgeItem(EffectorEdge edge, MetaboliteItem src, ReactionItem dst, AbstractCurvePoint... points) -
Uses of ReactionItem in omix.plugin.io
Methods in omix.plugin.io that return ReactionItem Modifier and Type Method Description ReactionItemModelComponentProviderInterface. provideReaction(Diagram diagram, InputUtilities utilities) -
Uses of ReactionItem in omix.plugin.model.writable
Methods in omix.plugin.model.writable that return types with arguments of type ReactionItem Modifier and Type Method Description List<? extends ReactionItem>Reaction. getDiagramItems()List<? extends ReactionItem>Reaction. getDiagramItems(Diagram diagram)