Module omix.api

Package omix.plugin.model

Interface EffectorEdge

All Superinterfaces:

AbstractEdge, AbstractModelComponent, AbstractVisibleComponent, ReadOnlyInterface

All Known Subinterfaces:

EffectorEdge

public interface EffectorEdge
extends AbstractEdge

Method Summary

Modifier and Type	Method	Description
MarkerShape	activationArrowShape()	The shape of the edge's arrow when it shows activation.
Brush	activationBrush()	The paint brush of the edge's arrow when it shows activation.
double	arrowSize()	The size of the edge's arrow given as multiple of the edge width.
AbstractBioNode	dst()
double	effect()	This field defines the regulatory strength represented by the edge.
List<? extends EffectorEdgeItem>	getDiagramItems()
List<? extends EffectorEdgeItem>	getDiagramItems(Diagram diagram)
MarkerShape	inhibitionArrowShape()	The shape of the edge's arrow when it shows inhibition.
Brush	inhibitionBrush()	The paint brush of the edge's arrow when it shows inhibition.
AbstractBioNode	src()
MarkerShape	unknownEffectArrowShape()	The shape of the edge's arrow when it shows unknown effect.
Brush	unknownEffectBrush()	The paint brush of the edge's arrow when it shows unknown effect.

Methods inherited from interface omix.plugin.model.AbstractEdge

blur, isHidden, lineStyle, lineWidth, shadow, strokeColor, strokeStyle, strokeWidth, transparency

Methods inherited from interface omix.plugin.model.AbstractModelComponent

addChangeListener, addPropertyChangeListener, fieldExists, getField, getField, getIdentifier, model, removeChangeListener, removePropertyChangeListener

Methods inherited from interface omix.plugin.model.AbstractVisibleComponent

accessoryExists, getAccessories, getAccessories, getAccessory, getAccessory, getAccessory, getAccessory, getAllAccessories, hasDiagramItems, hasDiagramItems

Method Details

src

AbstractBioNode src()

Specified by:

src in interface AbstractEdge

dst

AbstractBioNode dst()

Specified by:

dst in interface AbstractEdge

getDiagramItems

List<? extends EffectorEdgeItem> getDiagramItems()

Specified by:

getDiagramItems in interface AbstractEdge

Specified by:

getDiagramItems in interface AbstractVisibleComponent

getDiagramItems

List<? extends EffectorEdgeItem> getDiagramItems(Diagram diagram)

Specified by:

getDiagramItems in interface AbstractEdge

Specified by:

getDiagramItems in interface AbstractVisibleComponent

arrowSize

double arrowSize()

The size of the edge's arrow given as multiple of the edge width. Minimal value is 1.0.

activationArrowShape

MarkerShape activationArrowShape()

The shape of the edge's arrow when it shows activation.

inhibitionArrowShape

MarkerShape inhibitionArrowShape()

The shape of the edge's arrow when it shows inhibition.

unknownEffectArrowShape

MarkerShape unknownEffectArrowShape()

The shape of the edge's arrow when it shows unknown effect.

activationBrush

Brush activationBrush()

The paint brush of the edge's arrow when it shows activation.

inhibitionBrush

Brush inhibitionBrush()

The paint brush of the edge's arrow when it shows inhibition.

unknownEffectBrush

Brush unknownEffectBrush()

The paint brush of the edge's arrow when it shows unknown effect.

effect

double effect()

This field defines the regulatory strength represented by the edge. A value greater 0.0 is interpreted as activation, a value less than 0.0 as inhibition and the 0.0 marks an unknown effect. The effect property is directly visualized by color of the edge (green, yellow, red) and sign of the arrow (+, ?, -). When the effect value is between 0.0 and -1.0/1.0 the edge color is interpolated between yellow and red/green.