Module omix.api

Package omix.plugin.model

Interface AbstractBioNode

All Superinterfaces:

AbstractModelComponent, AbstractNode, AbstractVisibleComponent, ReadOnlyInterface

All Known Subinterfaces:

AbstractBioNode, Metabolite, Metabolite, Reaction, Reaction

public interface AbstractBioNode
extends AbstractNode

Method Summary

Modifier and Type	Method	Description
List<? extends EffectorEdge>	effectorEdges()	Returns an unchangeable List of all effector edges of this node.
List<? extends FluxEdge>	fluxEdges()
List<? extends AbstractBioNodeItem>	getDiagramItems()
List<? extends AbstractBioNodeItem>	getDiagramItems(Diagram diagram)
Set<? extends PublicIdentifier>	getPublicIdentifiers()	Returns the components public identifiers
List<? extends FluxEdge>	inEdges()	Returns an unchangeable List of all incoming flux edges of this node.
FormattedName	name()	Returns the item's name label as formatted text (html).
List<? extends FluxEdge>	outEdges()	Returns an unchangeable List of all outgoing flux edges of this node.
Synonyms	synonyms()	Returns the synonyms of the item as plain text.

Methods inherited from interface omix.plugin.model.AbstractModelComponent

addChangeListener, addPropertyChangeListener, fieldExists, getField, getField, model, removeChangeListener, removePropertyChangeListener

Methods inherited from interface omix.plugin.model.AbstractNode

blur, collapsed, fillLevel, fillLevelIndication, font, getCustomProperty, getIdentifier, graphicsEdges, hidden, paint, scale, setCustomProperty, setTmpCustomProperty, shadow, shape, strokeColor, strokeStyle, strokeWidth, textBrush, textStrokeColor, textStrokeWidth, transparency

Methods inherited from interface omix.plugin.model.AbstractVisibleComponent

accessoryExists, getAccessories, getAccessories, getAccessory, getAccessory, getAccessory, getAccessory, getAllAccessories, hasDiagramItems, hasDiagramItems

Method Details

name

FormattedName name()

Returns the item's name label as formatted text (html).

Returns:

name as formatted text

Since:

Omix 1.9.0

synonyms

Synonyms synonyms()

Returns the synonyms of the item as plain text.

Returns:

synonyms as plain text

Since:

Omix 1.9.0

getPublicIdentifiers

Set<? extends PublicIdentifier> getPublicIdentifiers()

Returns the components public identifiers

Returns:

set of public identifiers

Since:

Omix 1.9.0

getDiagramItems

List<? extends AbstractBioNodeItem> getDiagramItems()

Specified by:

getDiagramItems in interface AbstractNode

Specified by:

getDiagramItems in interface AbstractVisibleComponent

getDiagramItems

List<? extends AbstractBioNodeItem> getDiagramItems(Diagram diagram)

Specified by:

getDiagramItems in interface AbstractNode

Specified by:

getDiagramItems in interface AbstractVisibleComponent

inEdges

List<? extends FluxEdge> inEdges()

Returns an unchangeable List of all incoming flux edges of this node.

Returns:

flux edges

outEdges

List<? extends FluxEdge> outEdges()

Returns an unchangeable List of all outgoing flux edges of this node.

Returns:

flux edges

fluxEdges

List<? extends FluxEdge> fluxEdges()

effectorEdges

List<? extends EffectorEdge> effectorEdges()

Returns an unchangeable List of all effector edges of this node.

Returns:

effector edges