Uses of Interface
omix.lang.Shape

Packages that use Shape

Package	Description
omix.lang	This package contains types used in OVL.
omix.lang.model	This package contains all network components as OVL extendable types.
omix.lang.model.accessory.annotation	This package contains all data annotations available in OVL.
omix.plugin.diagram
omix.plugin.diagram.writable
omix.plugin.model
omix.plugin.model.util
omix.plugin.model.writable
omix.plugin.model.writable.accessory.annotation
omix.plugin.motifstamp
omix.plugin.motifstamp.writable
omix.util.math.curves	This package provides polynomial computation methods.

Uses of Shape in omix.lang

Classes in omix.lang that implement Shape

Modifier and Type	Class	Description
class	StandardShapes	This class implements the Shape interface.

Fields in omix.lang declared as Shape

Modifier and Type	Field	Description
static Shape	Shape.AngledRectangle	AngledRectangle.
static Shape	Shape.ChevronBottom	ChevronBottom.
static Shape	Shape.ChevronLeft	ChevronLeft.
static Shape	Shape.ChevronRight	ChevronRight.
static Shape	Shape.ChevronTop	ChevronTop.
static Shape	Shape.Circle	Circle.
static Shape	Shape.Diamond	Diamond.
static Shape	Shape.DoubleEmblemHorizontal	DoubleEmblemHorizontal.
static Shape	Shape.DoubleEmblemVertical	DoubleEmblemVertical.
static Shape	Shape.DoubleTagHorizontal	Horizontal double tag.
static Shape	Shape.DoubleTagVertical	Vertical double tag.
static Shape	Shape.Ellipse	Ellipse.
static Shape	Shape.EmblemBottom	EmblemBottom.
static Shape	Shape.EmblemLeft	EmblemLeft.
static Shape	Shape.EmblemRight	EmblemRight.
static Shape	Shape.EmblemTop	EmblemTop.
static Shape	Shape.EmptySet	EmptySet.
static Shape	Shape.FilledEmptySet	FilledEmptySet.
static Shape	Shape.Hexagon	Hexagon.
static Shape	Shape.Hexagon2	Hexagon2.
static Shape	Shape.Pentagon	Pentagon.
static Shape	Shape.Pentagon2	Pentagon2.
static Shape	Shape.Rectangle	Rectangle.
static Shape	Shape.RectangleHalfAngledBottom	RectangleHalfAngledBottom.
static Shape	Shape.RectangleHalfAngledTop	RectangleHalfAngledTop.
static Shape	Shape.RectangleHalfRoundedBottom	RectangleHalfRoundedBottom.
static Shape	Shape.RectangleHalfRoundedTop	RectangleHalfRoundedTop.
static Shape	Shape.ReversibilitySign	ReversibilitySign.
static Shape	Shape.RhomboidDown	RhomboidDown.
static Shape	Shape.RhomboidLeft	RhomboidLeft.
static Shape	Shape.RhomboidRight	RhomboidRight.
static Shape	Shape.RhomboidUp	RhomboidUp.
static Shape	Shape.RoundedRectangle	RoundedRectangle.
static Shape	Shape.Square	Square.
static Shape	Shape.TagBottom	TagBottom.
static Shape	Shape.TagLeft	TagLeft.
static Shape	Shape.TagRight	TagRight.
static Shape	Shape.TagTop	TagTop.
static Shape	Shape.TrapezoidBottom	TrapezoidBottom.
static Shape	Shape.TrapezoidLeft	TrapezoidLeft.
static Shape	Shape.TrapezoidRight	TrapezoidRight.
static Shape	Shape.TrapezoidTop	TrapezoidTop.
static Shape	Shape.TriangleBottom	TriangleBottom.
static Shape	Shape.TriangleLeft	TriangleLeft.
static Shape	Shape.TriangleRight	TriangleRight.
static Shape	Shape.TriangleTop	TriangleTop.

Methods in omix.lang that return Shape

Modifier and Type	Method	Description
static Shape[]	Shape.values()

Uses of Shape in omix.lang.model

Methods in omix.lang.model that return Shape

Modifier and Type	Method	Description
Shape	BioNode.shape()	The appearance of the metabolite node in the diagram.
Shape	Compartment.shape()	The fill brush of the item's shape.
Shape	GraphicsBox.shape()	The item's shape.
Shape	GraphicsItem.shape()	Deprecated. The item's shape.
Shape	GraphicsNode.shape()	The appearance of the metabolite node in the diagram.
Shape	Link.shape()	The appearance of the metabolite node in the diagram.
Shape	MetNode.shape()	Deprecated. The appearance of the metabolite node in the diagram.
Shape	Node.shape()	The appearance of the metabolite node in the diagram.

Uses of Shape in omix.lang.model.accessory.annotation

Methods in omix.lang.model.accessory.annotation that return Shape

Modifier and Type	Method	Description
Shape	SideBox.shape()	The appearance of the node in the diagram.
Shape	SubNode.shape()	Deprecated. The appearance of the node in the diagram.

Uses of Shape in omix.plugin.diagram

Methods in omix.plugin.diagram that return Shape

Modifier and Type	Method	Description
Shape	MetaboliteItem.shape()

Uses of Shape in omix.plugin.diagram.writable

Methods in omix.plugin.diagram.writable with parameters of type Shape

Modifier and Type	Method	Description
void	MetaboliteItem.setShape(Shape shape)

Uses of Shape in omix.plugin.model

Methods in omix.plugin.model that return Shape

Modifier and Type	Method	Description
Shape	StyleSheet.compartmentShape()	The fill brush of the item's shape.
Shape	StyleSheet.metaboliteShape()	The appearance of the metabolite node in the diagram.
Shape	Pathway.reactionShape()	The appearance of the reaction node in the diagram.
Shape	StyleSheet.reactionShape()	The appearance of the reaction node in the diagram.
Shape	AbstractNode.shape()	The appearance of the node in the diagram.
Shape	Compartment.shape()	The fill brush of the item's shape.
Shape	GraphicsBox.shape()	The item's shape.
Shape	GraphicsNode.shape()	The appearance of the metabolite node in the diagram.
Shape	Link.shape()	The appearance of the metabolite node in the diagram.

Uses of Shape in omix.plugin.model.util

Subinterfaces of Shape in omix.plugin.model.util

Modifier and Type	Interface	Description
interface	CustomShape	This interface represents custom symbol shapes in Omix.

Uses of Shape in omix.plugin.model.writable

Methods in omix.plugin.model.writable with parameters of type Shape

Modifier and Type	Method	Description
void	StyleSheet.setCompartmentShape(Shape shape)	Sets the compartments' default shape.
void	StyleSheet.setMetaboliteShape(Shape shape)	Changes the default value for the metabolites' default shape.
void	Pathway.setReactionShape(Shape shape)	Changes the default value for the reactions' shape.
void	StyleSheet.setReactionShape(Shape shape)	Changes the default value for the reactions' default shape.
void	AbstractNode.setShape(Shape shape)	The appearance of the metabolite node in the diagram.
void	Compartment.setShape(Shape shape)	Sets the item's shape.
void	GraphicsBox.setShape(Shape shape)	Changes the appearance of the metabolite node in the diagram.

Uses of Shape in omix.plugin.model.writable.accessory.annotation

Methods in omix.plugin.model.writable.accessory.annotation with parameters of type Shape

Modifier and Type	Method	Description
void	SideBox.setShape(Shape shape)	The appearance of the node in the diagram.

Uses of Shape in omix.plugin.motifstamp

Methods in omix.plugin.motifstamp that return Shape

Modifier and Type	Method	Description
Shape	GraphicsNode.shape()	The appearance of the metabolite node in the diagram.
Shape	Metabolite.shape()	The appearance of the metabolite node in the diagram.

Uses of Shape in omix.plugin.motifstamp.writable

Methods in omix.plugin.motifstamp.writable with parameters of type Shape

Modifier and Type	Method	Description
void	GraphicsNode.setShape(Shape shape)	The appearance of the metabolite node in the diagram.
void	Metabolite.setShape(Shape shape)	The appearance of the metabolite node in the diagram.

Uses of Shape in omix.util.math.curves

Methods in omix.util.math.curves with parameters of type Shape

Modifier and Type	Method	Description
static Shape	ShapeUtility.computeShape(Rectangle2D bounds, Shape shape, Map<DockingPosition,Point2D> edgePorts)	This method converts a Shape into a Shape and returns a Map of docking positions.
static Shape	ShapeUtility.getAWTShape(Shape shape, Rectangle2D.Double bounds)	This method converts a Shape into a Shape.
static Vec2d	ShapeUtility.getDockingPosition(DockingPosition dock, Shape shape, Rectangle2D bounds)	computes the docking position on a certain shape (this method is not yet implemented and does currently return (0,0))