R-Index (Omix API)

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R

RadialGradient - Class in omix.lang: This class represents radial gradients.
RadialGradient(Map<Double, Color>, Gradient.Spread) - Constructor for class omix.lang.RadialGradient: Creates a gradient according to the submitted set of colors.
RadialGradient(Color) - Constructor for class omix.lang.RadialGradient: The same as RadialGradient(color, color, Spread.PadSpread)
RadialGradient(Color, Color) - Constructor for class omix.lang.RadialGradient: The same as RadialGradient(color0, color1, Spread.PadSpread)
RadialGradient(Color, Color, Gradient.Spread) - Constructor for class omix.lang.RadialGradient: Creates a gradient between the two submitted colors.
RadialGradient(Color, Gradient.Spread) - Constructor for class omix.lang.RadialGradient: The same as RadialGradient(color, color, spread)
radian - omix.mathxp.units.DerivedUnit
radius() - Method in interface omix.plugin.model.points.Arc: Returns the radius of the arc.
(radiusX + radiusY)/2
radiusX - Variable in class omix.util.math.curves.ArcSectionComputer2D: X radius of the arc.
radiusX() - Method in interface omix.plugin.model.points.Arc: Returns the radius in X direction.
radiusY - Variable in class omix.util.math.curves.ArcSectionComputer2D: Y radius of the arc.
radiusY() - Method in interface omix.plugin.model.points.Arc: Returns the radius in Y direction.
rangeAxis() - Method in class omix.lang.chart.AbstractCategoryChart
rawData - Variable in class omix.plugin.type.TypeSerializationHandlerInterface.RawDataSerialization
RawData - Class in omix.plugin.util: This class represents data in combination with the data format given as file suffix.
RawData(byte[], String) - Constructor for class omix.plugin.util.RawData
RawDataSerialization(byte[]) - Constructor for class omix.plugin.type.TypeSerializationHandlerInterface.RawDataSerialization
RBRACKET - Static variable in class omix.mathxp.parser.MathExpressionsLexer
RBRACKET - Static variable in class omix.mathxp.parser.MathExpressionsParser
Reaction - omix.plugin.io.ModelComponentProviderInterface.ItemType
Reaction - Interface in omix.lang.model: This type represents reactions in OVL.
Reaction - Interface in omix.plugin.model
Reaction - Interface in omix.plugin.model.writable
reactionAccessoryAnchorFloating() - Method in interface omix.plugin.model.StyleSheet
reactionAccessoryAnchorPlacement() - Method in interface omix.plugin.model.StyleSheet
reactionAccessoryFloating() - Method in interface omix.plugin.model.StyleSheet
reactionAccessoryOrientation() - Method in interface omix.plugin.model.StyleSheet
reactionAccessorySpacing() - Method in interface omix.plugin.model.StyleSheet
reactionBlur() - Method in interface omix.plugin.model.Pathway: The blur of the node.
reactionBlur() - Method in interface omix.plugin.model.StyleSheet: The blur of the node.
reactionCollapsed() - Method in interface omix.plugin.model.Pathway: Collapsed-state of the network component.
reactionCollapsed() - Method in interface omix.plugin.model.StyleSheet: Collapsed-state of the network component.
reactionExists(String) - Method in interface omix.plugin.model.Model: Determines if reaction of certain name exists.
reactionExists(String) - Method in interface omix.plugin.model.writable.Model: Determines if reaction of certain name exists.
reactionFillLevel() - Method in interface omix.plugin.model.Pathway: The filling level of the item's shape given as percentage value.
reactionFillLevel() - Method in interface omix.plugin.model.StyleSheet: The filling level of the item's shape given as percentage value.
reactionFillLevelIndication() - Method in interface omix.plugin.model.Pathway: The indication for filling of the item's shape.
reactionFillLevelIndication() - Method in interface omix.plugin.model.StyleSheet: The indication for filling of the item's shape.
reactionFont() - Method in interface omix.plugin.model.Pathway: The font of the text label of the item.
reactionFont() - Method in interface omix.plugin.model.StyleSheet: The font of the text label of the item.
ReactionItem - Interface in omix.plugin.diagram
ReactionItem - Interface in omix.plugin.diagram.writable
reactionLabelConfiguration() - Method in interface omix.plugin.model.StyleSheet
reactionLabelFloating() - Method in interface omix.plugin.model.StyleSheet
reactionLabelHidden() - Method in interface omix.plugin.model.StyleSheet
reactionLabelPlacement() - Method in interface omix.plugin.model.StyleSheet
reactionPaint() - Method in interface omix.plugin.model.Pathway: The fill appearance of the item's shape.
reactionPaint() - Method in interface omix.plugin.model.StyleSheet: The fill appearance of the item's shape.
reactions() - Method in interface omix.lang.model.MetabolicNetwork: Deprecated.

Returns an unchangeable List of all reaction nodes.
reactions() - Method in interface omix.lang.model.Model: Returns an unchangeable List of all reaction nodes.
reactions() - Method in interface omix.lang.model.Pathway: Returns an unchangeable List of all reactions that are part of this pathway.
reactions() - Method in interface omix.plugin.diagram.Diagram: Returns an unchangeable List of all reaction nodes.
reactions() - Method in interface omix.plugin.diagram.PathwayItem
reactions() - Method in interface omix.plugin.diagram.writable.Diagram: Returns an unchangeable List of all reaction nodes.
reactions() - Method in interface omix.plugin.diagram.writable.PathwayItem
reactions() - Method in interface omix.plugin.model.Model: Returns an unchangeable List of all reaction nodes.
reactions() - Method in interface omix.plugin.model.Pathway
reactions() - Method in interface omix.plugin.model.writable.Model: Returns an unchangeable List of all reaction nodes.
reactions() - Method in interface omix.plugin.model.writable.Pathway
Reactions - omix.plugin.identity.IdentifierCollection.TargetType
reactionScale() - Method in interface omix.plugin.model.Pathway: The scale factor the node is displayed with.
reactionScale() - Method in interface omix.plugin.model.StyleSheet: The scale factor the node is displayed with.
reactionShadow() - Method in interface omix.plugin.model.Pathway: The shadow of the item.
reactionShadow() - Method in interface omix.plugin.model.StyleSheet: The shadow of the item.
reactionShape() - Method in interface omix.plugin.model.Pathway: The appearance of the reaction node in the diagram.
reactionShape() - Method in interface omix.plugin.model.StyleSheet: The appearance of the reaction node in the diagram.
reactionStrokeColor() - Method in interface omix.plugin.model.Pathway: The color for the stroke of the item's shape.
reactionStrokeColor() - Method in interface omix.plugin.model.StyleSheet: The color for the stroke of the item's shape.
reactionStrokeStyle() - Method in interface omix.plugin.model.Pathway: The paint style for the stroke of the item's shape.
reactionStrokeStyle() - Method in interface omix.plugin.model.StyleSheet: The paint style for the stroke of the item's shape.
reactionStrokeWidth() - Method in interface omix.plugin.model.Pathway: The stroke width of the item's shape.
reactionStrokeWidth() - Method in interface omix.plugin.model.StyleSheet: The stroke width of the item's shape.
reactionTextBrush() - Method in interface omix.plugin.model.Pathway: The fill brush of the item's text label.
reactionTextBrush() - Method in interface omix.plugin.model.StyleSheet: The fill brush of the item's text label.
reactionTextStrokeColor() - Method in interface omix.plugin.model.Pathway: The color for the stroke of the item's text label.
reactionTextStrokeColor() - Method in interface omix.plugin.model.StyleSheet: The color for the stroke of the item's text label.
reactionTextStrokeWidth() - Method in interface omix.plugin.model.Pathway: The stroke width of the item's text label.
reactionTextStrokeWidth() - Method in interface omix.plugin.model.StyleSheet: The stroke width of the item's text label.
reactionTransparency() - Method in interface omix.plugin.model.Pathway: The transparency of the node.
reactionTransparency() - Method in interface omix.plugin.model.StyleSheet: The transparency of the node.
read - omix.plugin.io.util.IOFlag: Read operation
read(String, URLConnection, Model, InputUtilities) - Method in interface omix.plugin.io.ModelIOHandlerInterface: Reading network content from file.
read(String, URLConnection, Model, InputUtilities) - Method in class omix.util.io.AbstractModelIODomHandler: This method catch various types of exceptions and generate adequate error messages.
read(String, URLConnection, Model, InputUtilities) - Method in class omix.util.io.AbstractModelIOHandler
readDataSource(String, URLConnection, DataInputUtilities) - Method in interface omix.plugin.data.FileDataSourceHandlerInterface
readField(OVLEnvironment, String, Object, String) - Static method in class omix.lang.OmixApplication: This method dynamically reads the content of the object's field.
readFromDom(String, URLConnection, Model, InputUtilities) - Method in class omix.util.io.AbstractModelIODomHandler: Reads an XML file by using DOM.
readFromDom(String, URLConnection, Model, InputUtilities) - Method in class omix.util.io.StandardModelIODomHandler: Manages the parsing of a XML file into a Document.
readFunction(Element, List<MathExpression>) - Method in interface omix.mathxp.io.MathSymbolReaderInterface
readMathElement(Element, String) - Method in class omix.mathxp.io.MathMLReader
readMathExpression(Element) - Method in class omix.mathxp.io.MathMLReader
readMathExpressions(Element) - Method in class omix.mathxp.io.MathMLReader
readModel(Model, InputUtilities) - Method in interface omix.plugin.ModelReader: This method is called when the plugin has requested a model reading procedure
by calling: ApplicationAccessManager.requestOpenDocumentProcedure(ModelReader) or ApplicationAccessManager#requestImportDocumentProcedure(ModelReader) DocumentAccessManager#requestImportDocumentProcedure(ModelReader) The method will run in an extra thread!
readOmixModel(Model, Element) - Method in class omix.util.io.AbstractDomReader: This method assembles the model according the content inside the given DOM element.
readonly() - Method in annotation type omix.lang.annotation.Capabilities.PropertyCapabilities
ReadOnly - Annotation Type in omix.lang.annotation: Forbids editing the annotated field in the property editor of Omix.
ReadOnlyInterface - Interface in omix.plugin.model.util
readReference(Element) - Method in interface omix.mathxp.io.MathSymbolReaderInterface
readThumbnail(URLConnection) - Method in interface omix.plugin.io.ModelIOHandlerInterface: This method is called when the user selects a file in the file dialog in order to get a thumbnail picture.
readThumbnail(URLConnection) - Method in class omix.util.io.AbstractModelIOHandler: Empty implementation.
readUnit(Element) - Method in interface omix.mathxp.io.UnitReaderInterface
readUsernamePassword(String) - Method in interface omix.plugin.util.Authenticator: Reads username & password from the wallet without user interaction.
readUsernamePassword(String, boolean) - Method in interface omix.plugin.util.Authenticator: Reads username & password from the wallet without user request.
recordEnabled() - Method in interface omix.lang.model.accessory.trigger.DoubleTrigger: if true trigger can record images
recordEnabled() - Method in interface omix.lang.model.accessory.trigger.IntegerTrigger: if true trigger can record images
rect() - Method in interface omix.plugin.type.util.PaintValueUtilities: Access to the bounds of the painted area
Rectangle - omix.lang.StandardMarkerShapes
Rectangle - omix.lang.StandardShapes: Rectangle.
Rectangle - Static variable in interface omix.lang.MarkerShape: Rectangle.
Rectangle - Static variable in interface omix.lang.Shape: Rectangle.
RectangleEdge - Enum in omix.lang.chart.util: This enum represents the possible locations of char title and legend.
RectangleHalfAngledBottom - omix.lang.StandardShapes: RectangleHalfAngledBottom.
RectangleHalfAngledBottom - Static variable in interface omix.lang.Shape: RectangleHalfAngledBottom.
RectangleHalfAngledTop - omix.lang.StandardShapes: RectangleHalfAngledTop.
RectangleHalfAngledTop - Static variable in interface omix.lang.Shape: RectangleHalfAngledTop.
RectangleHalfRoundedBottom - omix.lang.StandardShapes: RectangleHalfRoundedBottom.
RectangleHalfRoundedBottom - Static variable in interface omix.lang.Shape: RectangleHalfRoundedBottom.
RectangleHalfRoundedTop - omix.lang.StandardShapes: RectangleHalfRoundedTop.
RectangleHalfRoundedTop - Static variable in interface omix.lang.Shape: RectangleHalfRoundedTop.
redo() - Method in interface omix.plugin.undo.UndoableAction
reference() - Method in class omix.mathxp.parser.MathExpressionsParser
ReferenceInterface - Interface in omix.mathxp.references
ReflectSpread - omix.lang.Gradient.Spread: The gradient spreads reflecting.
reinitialize() - Method in interface omix.plugin.ui.ConfigWidgetInterface: Is called by the configuration window when the reset button is pressed.
Here, a custom program must reset all displayed settings.
reinitialize() - Method in class omix.util.ui.AbstractConfigWidget: Is called by the configuration window when the reset button is pressed.
Here, a custom program must reset all displayed settings.
relationalExpression() - Method in class omix.mathxp.parser.MathExpressionsParser
reload(DataInputUtilities) - Method in interface omix.plugin.data.DataSourceInterface
reloadIcons() - Method in interface omix.plugin.IconReloadable: Every time the system dark mode is changed this method is called to reload all style-dependent icons.
reloadLabels() - Method in interface omix.plugin.LabelReloadable: Every time the software language is changed by the user this method is called to reload all GUI texts.
remainder(Number) - Method in class omix.util.math.BigFraction
remainder(Number, Number) - Static method in class omix.mathxp.util.MathUtilities
remainder(Number, MathContext) - Method in class omix.util.math.BigFraction
remove(int) - Method in class omix.util.collections.HashList
remove(int) - Method in class omix.util.collections.WeakList
remove(Object) - Method in class omix.util.collections.HashList
remove(Object) - Method in class omix.util.collections.WeakList
remove(Object) - Method in class omix.util.collections.WeakMap
remove(Object) - Method in class omix.util.collections.WeakSet
remove(Object) - Method in class omix.util.collections.WeakWeakMap
Remove - omix.plugin.model.util.ChangeEvent.EventType
removeAction(QAction) - Method in class omix.plugin.ui.PopupMenuAction
removeAll(Collection<?>) - Method in class omix.util.collections.HashList
removeAll(Collection<?>) - Method in class omix.util.collections.WeakList
removeAll(Collection<?>) - Method in class omix.util.collections.WeakSet
removeCategory(String) - Method in class omix.lang.chart.data.ComposedCategoryDataset
removeCategory(String) - Method in class omix.lang.chart.util.ErrorComposedDataset
removeChangeListener(ChangeListener) - Method in interface omix.plugin.diagram.AbstractItem
removeChangeListener(ChangeListener) - Method in interface omix.plugin.diagram.Diagram
removeChangeListener(ChangeListener) - Method in interface omix.plugin.model.AbstractModelComponent
removeChangeListener(ChangeListener) - Method in interface omix.plugin.model.Model: Removes the listener which is therefore no longer triggered.
removeChangeListener(ModelChangeListener) - Method in interface omix.plugin.model.Model: Removes the listener which is therefore no longer triggered.
removeChangeListener(ModelChangeListener) - Method in interface omix.plugin.model.writable.Model: Removes the listener which is therefore no longer triggered.
removeChartChangeListener(ChartChangeListener) - Method in class omix.lang.chart.Chart
removeChartChangeListener(ChartChangeListener) - Method in class omix.lang.chart.data.TableDataReference
removeClosingWidgetListener(ClosingWidgetInterface.ClosingWidgetListener) - Method in interface omix.plugin.type.util.ClosingWidgetInterface: Removes a listener
removeComponent(AbstractModelComponent) - Method in interface omix.plugin.model.writable.Model
removeContextMenuEntryProvider(ContextMenuEntryProvider) - Method in interface omix.plugin.model.Model
RemoveCustomShapes - omix.plugin.model.util.ModelCapability
Removed - omix.util.ui.AnnotationChangeEvent.ChangeType
removeDataManagerChangeListener(DataManager.DataManagerChangeListener) - Method in interface omix.plugin.data.DataManager
removeDataMatrixChangeListener(DataMatrixChangeListener) - Method in interface omix.plugin.data.DataMatrixInterface
removeDataMatrixChangeListener(DataMatrixChangeListener) - Method in interface omix.plugin.data.Table
removeDataMatrixChangeListener(DataMatrixChangeListener) - Method in class omix.util.data.AbstractDataMatrix: Removes the change listener from the data matrix if available.
removeDataReference(T) - Method in class omix.lang.chart.data.TableDataset: Removes the specified table data reference from the dataset.
removeDatasetChangeListener(DatasetChangeListener) - Method in class omix.lang.chart.data.ComposedDataset: remove the given change listener.
removeDatasetChangeListener(DatasetChangeListener) - Method in interface omix.lang.chart.data.Dataset: remove the given change listener.
removeDatasetChangeListener(DatasetChangeListener) - Method in class omix.lang.chart.data.TableDataset: remove the given change listener.
removeDataSourceChangeListener(DataSourceChangeListener) - Method in interface omix.plugin.data.DataSourceInterface
removeDiagram(Diagram) - Method in interface omix.plugin.model.writable.Model
RemoveDiagrams - omix.plugin.model.util.ModelCapability
removeDockWidget(QDockWidget) - Method in interface omix.plugin.AbstractAccessManager: Removes the dock widget to the Omix mainwindow.
removeErrorTableReference(ErrorTableDataset.ErrorTableReference) - Method in class omix.lang.chart.util.ErrorTableDataset
removeIf(Predicate<? super E>) - Method in class omix.util.collections.WeakCollection
removeItem(Component) - Method in interface omix.lang.model.accessory.annotation.ItemGroup: Remove item from the item list.
removeItem(AbstractItem) - Method in interface omix.plugin.diagram.writable.Diagram
removeItem(Guideline) - Method in interface omix.plugin.diagram.writable.Diagram
removeItem(PatternItem) - Method in interface omix.plugin.diagram.writable.Diagram
RemoveItems - omix.plugin.model.util.ModelCapability
removeMenu(QMenu) - Method in interface omix.plugin.AbstractAccessManager: Removes the menu from the menubar of Omix.
removeMenuItem(QAction) - Method in interface omix.plugin.AbstractAccessManager: Removes the action from the menubar.
removeModelComponent(AbstractModelComponent) - Method in interface omix.plugin.model.accessory.annotation.ItemGroup: Remove item from the item list.
removeMotifStamp(MotifStamp) - Method in interface omix.plugin.model.writable.Model
RemoveMotifStamps - omix.plugin.model.util.ModelCapability
removeProperty(String) - Method in interface omix.plugin.vod.VoDObject
removePropertyChangeListener(PropertyChangeListener) - Method in class omix.lang.chart.util.ChartStyleElement
removePropertyChangeListener(PropertyChangeListener) - Method in interface omix.plugin.diagram.AbstractItem
removePropertyChangeListener(PropertyChangeListener) - Method in interface omix.plugin.diagram.Guideline
removePropertyChangeListener(PropertyChangeListener) - Method in interface omix.plugin.model.AbstractModelComponent
removePropertyChangeListener(PropertyChangeListener) - Method in interface omix.plugin.model.Model
removePropertyChangeListener(PropertyChangeListener) - Method in interface omix.plugin.model.points.AbstractCurvePoint
removePublicIdentifier(PublicIdentifier) - Method in interface omix.plugin.model.writable.Compartment: Removes the public identifier from the item.
removePublicIdentifier(PublicIdentifier) - Method in interface omix.plugin.model.writable.MetaboliteType: Removes the public identifier from the item.
removePublicIdentifier(PublicIdentifier) - Method in interface omix.plugin.model.writable.Model: Removes the public identifier from the model.
removePublicIdentifier(PublicIdentifier) - Method in interface omix.plugin.model.writable.Pathway: Removes the public identifier from the item.
removePublicIdentifier(PublicIdentifier) - Method in interface omix.plugin.model.writable.Reaction: Removes the public identifier from the item.
removeResizeListener(TypeGraphicsHandlerInterface.ValuePainterInterface.ResizeListenerInterface) - Method in interface omix.plugin.type.TypeGraphicsHandlerInterface.ValuePainterInterface
removeSender(ValueChangeSender) - Method in interface omix.lang.reflect.ValueChangeListener: This method is called from inside ValueChangeSender.disconnect(ValueChangeListener...) in order to remove the bidirectional connection.
removeSender(ValueChangeSender) - Method in class omix.util.ui.EventBasedItemPropertyChangeListener: This method is called from inside ValueChangeSender.disconnect(ValueChangeListener...) in order to remove the bidirectional connection.
removeSender(ValueChangeSender) - Method in class omix.util.ui.EventBasedValueChangeListener: This method is called from inside ValueChangeSender.disconnect(ValueChangeListener...) in order to remove the bidirectional connection.
removeSender(ValueChangeSender) - Method in class omix.util.ValueChangeAdapter: This method is called from inside ValueChangeSender.disconnect(ValueChangeListener...) in order to remove the bidirectional connection.
removeSeries(String) - Method in class omix.lang.chart.data.AbstractComposedXYDataset
removeSeries(String) - Method in class omix.lang.chart.data.ComposedCategoryDataset
removeSeries(String) - Method in class omix.lang.chart.util.ErrorComposedDataset
removeShutdownHook(Runnable) - Static method in class omix.util.ui.ThreadAffineUtility
removeSynonym(int) - Method in interface omix.plugin.model.writable.Compartment: Removes the synonym from the item.
removeSynonym(int) - Method in interface omix.plugin.model.writable.MetaboliteType: Removes the synonym from the item.
removeSynonym(int) - Method in interface omix.plugin.model.writable.Pathway: Removes the synonym from the item.
removeSynonym(int) - Method in interface omix.plugin.model.writable.Reaction: Removes the synonym from the item.
removeSynonym(String) - Method in interface omix.plugin.model.writable.Compartment: Removes the synonym from the item.
removeSynonym(String) - Method in interface omix.plugin.model.writable.MetaboliteType: Removes the synonym from the item.
removeSynonym(String) - Method in interface omix.plugin.model.writable.Pathway: Removes the synonym from the item.
removeSynonym(String) - Method in interface omix.plugin.model.writable.Reaction: Removes the synonym from the item.
removeToolBar(QToolBar) - Method in interface omix.plugin.AbstractAccessManager: Removes the toolbar from the mainwindow.
removeToolBarAction(QAction) - Method in interface omix.plugin.AbstractAccessManager: Removes the action from the plugin toolbar.
removeUpdateListener(TypeGraphicsHandlerInterface.ValuePainterInterface.UpdateListenerInterface) - Method in interface omix.plugin.type.TypeGraphicsHandlerInterface.ValuePainterInterface
removeValue(int) - Method in class omix.lang.JsonArray
removeValue(Object) - Method in class omix.lang.JsonArray
removeValue(B) - Method in class omix.util.collections.SortedTreeMap: Removes the value from the map.
removeValue(String) - Method in interface omix.lang.JsonObject
removeValue(String) - Method in interface omix.plugin.util.Settings: Removes the key (identifier) value pair from the settings file
removeValue(String, int) - Method in class omix.lang.chart.data.AbstractComposedXYDataset
removeValue(String, String) - Method in interface omix.plugin.util.Settings: Removes the key (group\identifier) value pair from the settings file
removeValue(T) - Method in class omix.util.collections.DoubleMap: Removes the value from the map.
removeValue(T) - Method in class omix.util.collections.FloatMap: Removes the value from the map.
rename(String, String) - Method in interface omix.plugin.net.URLConnectionInterface: Renames a file or directory.
renameCategories(String, String) - Method in class omix.lang.chart.data.ComposedCategoryDataset
renameCategories(String, String) - Method in class omix.lang.chart.util.ErrorComposedDataset
renameSeries(String, String) - Method in class omix.lang.chart.data.AbstractComposedXYDataset
renameSeries(String, String) - Method in class omix.lang.chart.data.ComposedCategoryDataset
renameSeries(String, String) - Method in class omix.lang.chart.util.ErrorComposedDataset
render(QPainter, QSizeF) - Method in interface omix.plugin.ImageRenderer: This method is called when the plug-in calls AbstractAccessManager.requestExportImageProcedure(String, QSizeF, ImageRenderer) and the user has selected a file path.
render(QPainter, QSizeF) - Method in class omix.util.ui.GraphicsSceneRenderer
RepeatSpread - omix.lang.Gradient.Spread: The gradient spreads repeating.
replaceAll(UnaryOperator<E>) - Method in class omix.util.collections.WeakList
replaceAll(List<T>, T, T) - Static method in class omix.util.collections.Collections
ReplacedBy - Annotation Type in omix.util.annotation: This annotation should be used in combination with Deprecated and provide information about the replacement of a deprecated method or class.
replies() - Method in interface omix.lang.model.Comment: Deprecated.

Returns an unchangeable List of all replies.
replies() - Method in interface omix.plugin.diagram.Comment: Returns an unchangeable List of all replies.
replies() - Method in interface omix.plugin.diagram.writable.Comment
Representations(int) - Constructor for class omix.plugin.data.DataMatrixInterface.Representations
Representations(DataMatrixInterface.Representation...) - Constructor for class omix.plugin.data.DataMatrixInterface.Representations
requestExportDocumentProcedure(ModelWriter) - Method in interface omix.plugin.ModelDocument: Exporting the current network document.
requestExportImageProcedure(String, QSizeF, ImageRenderer) - Method in interface omix.plugin.AbstractAccessManager: This method allows a plug-in to ask for an image export procedure.
requestImportDocumentProcedure(ModelReader) - Method in interface omix.plugin.ModelDocument: Importing a network into the current document.
requestOpenDataSource(URL) - Method in interface omix.plugin.ModelDocument: Loading the data source into the data manager widget.
requestOpenDataSource(DataSourceInterface, String) - Method in interface omix.plugin.ModelDocument: Loading the submitted DataSourceInterface instance into the data manager widget.
requestOpenDocumentProcedure(ModelReader) - Method in interface omix.plugin.ApplicationAccessManager: Opening a network as new document.
requestResize() - Method in interface omix.plugin.type.TypeGraphicsHandlerInterface.ValuePainterInterface.ResizeListenerInterface
requestUpdate() - Method in interface omix.plugin.type.TypeGraphicsHandlerInterface.ValuePainterInterface.UpdateListenerInterface
resizable() - Method in annotation type omix.lang.annotation.Capabilities
resizable() - Method in annotation type omix.lang.annotation.Editable
resolve(int) - Static method in enum omix.plugin.data.DataMatrixInterface.DeletableFlag
resolve(int) - Static method in enum omix.plugin.data.DataMatrixInterface.Representation
resolveEntity(String, String) - Method in class omix.util.io.AbstractModelIODomHandler: Gives access to a document type definition or an XML schema file
restoreOverrideCursor() - Static method in class omix.util.ui.CursorUtility
retainAll(Collection<?>) - Method in class omix.util.collections.HashList
retainAll(Collection<?>) - Method in class omix.util.collections.WeakList
retainAll(Collection<?>) - Method in class omix.util.collections.WeakSet
reverse(List<?>) - Static method in class omix.util.collections.Collections
reverseOrder() - Static method in class omix.util.collections.Collections
reverseOrder(Comparator<T>) - Static method in class omix.util.collections.Collections
ReverseTriangle - omix.lang.StandardMarkerShapes
ReverseTriangle - Static variable in interface omix.lang.MarkerShape: ReverseTriangle.
reversibilityDesign() - Method in interface omix.plugin.model.StyleSheet
ReversibilityDesign - Enum in omix.util
reversibilityFlagsHidden() - Method in interface omix.plugin.model.StyleSheet
ReversibilitySign - omix.lang.StandardMarkerShapes
ReversibilitySign - omix.lang.StandardShapes: ReversibilitySign.
ReversibilitySign - Static variable in interface omix.lang.MarkerShape: ReversibilitySign.
ReversibilitySign - Static variable in interface omix.lang.Shape: ReversibilitySign.
reversibilitySignBrush() - Method in interface omix.lang.model.FluxEdge: The paint brush used to display the edge's reversibility sign.
reversibilitySignBrush() - Method in interface omix.plugin.model.FluxEdge: The paint brush used to display the edge's reversibility sign.
reversibilitySignBrush() - Method in interface omix.plugin.model.LinkEdge.FluxEdgeAppearance: The paint brush used to display the edge's reversibility sign.
reversibilitySignBrush() - Method in interface omix.plugin.motifstamp.writable.FluxEdge: The paint brush used to display the edge's reversibility sign.
reversibilitySignScale() - Method in interface omix.lang.model.FluxEdge: The scale of the edge's reversibility sign given as multiple of the edge width (>0).
reversibilitySignScale() - Method in interface omix.plugin.model.FluxEdge: The scale of the edge's reversibility sign given as multiple of the edge width (>0).
reversibilitySignScale() - Method in interface omix.plugin.model.LinkEdge.FluxEdgeAppearance: The scale of the edge's reversibility sign given as multiple of the edge width (>0).
reversibilitySignScale() - Method in interface omix.plugin.motifstamp.writable.FluxEdge: The scale of the edge's reversibility sign given as multiple of the edge width (>0).
reversible() - Method in interface omix.lang.model.Reaction: Reversibility of the enzymatic reaction.
reversible() - Method in interface omix.plugin.model.Reaction: Reversibility of the enzymatic reaction.
RGB - omix.lang.ColorInterpolator.ColorSpace: RGB color space consisting of one byte for red, green and blue.
rgba() - Method in class omix.lang.Color
RhomboidDown - omix.lang.StandardShapes: RhomboidDown.
RhomboidDown - Static variable in interface omix.lang.Shape: RhomboidDown.
RhomboidLeft - omix.lang.StandardShapes: RhomboidLeft.
RhomboidLeft - Static variable in interface omix.lang.Shape: RhomboidLeft.
RhomboidRight - omix.lang.StandardShapes: RhomboidRight.
RhomboidRight - Static variable in interface omix.lang.Shape: RhomboidRight.
RhomboidUp - omix.lang.StandardShapes: RhomboidUp.
RhomboidUp - Static variable in interface omix.lang.Shape: RhomboidUp.
Rhombus - omix.lang.StandardMarkerShapes
Rhombus - Static variable in interface omix.lang.MarkerShape: Rhombus.
Right - omix.lang.chart.util.AbstractTitle.Position
Right - omix.lang.chart.util.RectangleEdge
Right - omix.util.AccessoryAnchorPlacement
Right - omix.util.NodeLabelPlacement
RingChart - Class in omix.lang.chart
RingChart() - Constructor for class omix.lang.chart.RingChart
RingChart(CategoryDataset) - Constructor for class omix.lang.chart.RingChart
rm(String) - Method in interface omix.plugin.net.URLConnectionInterface: Deletes the given path.
ROLL - omix.util.math.vector.Matrix4d.RotationType: Rotation about X axis.
ROLL - omix.util.math.vector.Matrix4f.RotationType: Rotation about X axis.
root() - Method in class omix.mathxp.ui.scene.MathConstant2D
root() - Method in class omix.mathxp.ui.scene.MathFunction2D
root() - Method in interface omix.mathxp.ui.scene.MathItem2DInterface
root() - Method in class omix.mathxp.ui.scene.MathOperation2D
root() - Method in class omix.mathxp.ui.scene.MathReference2D
root() - Method in class omix.mathxp.ui.scene.MathRoot2D
root(UnitInterface, int) - Static method in class omix.mathxp.units.UnitUtilities
rotate(double) - Method in class omix.util.math.vector.Vec2d: Rotates the vector.
rotate(double) - Method in class omix.util.ui.QPaintGraphics2D
rotate(double, double, double) - Method in class omix.util.ui.QPaintGraphics2D
rotate(float) - Method in class omix.util.math.vector.Vec2f: Rotates the vector.
rotate(List<?>, int) - Static method in class omix.util.collections.Collections
rotation() - Method in interface omix.plugin.diagram.GraphicsBoxItem
RoundedRectangle - omix.lang.StandardShapes: RoundedRectangle.
RoundedRectangle - Static variable in interface omix.lang.Shape: RoundedRectangle.
row - Variable in class omix.lang.data.Table.SelectedCell
row - Variable in class omix.lang.data.Table.SelectedRow
rowLabel(int) - Method in interface omix.lang.data.HVHeadersTable: returns the label of the given row.
rowLabel(int) - Method in interface omix.lang.data.VHeaderTable: returns the label of the given row.
rowLabelData() - Method in interface omix.plugin.data.HVHeadersTable: returns a list of all available rows.
rowLabelData() - Method in interface omix.plugin.data.VHeaderTable: returns a list of all available rows.
rowLabelData(int) - Method in interface omix.plugin.data.HVHeadersTable: returns the label data of the given row.
rowLabelData(int) - Method in interface omix.plugin.data.VHeaderTable: returns the label data of the given row.
rowLabels() - Method in interface omix.lang.data.HVHeadersTable: returns a list of all available row.
rowLabels() - Method in interface omix.lang.data.VHeaderTable: returns a list of all available rows.
rows() - Method in interface omix.lang.data.HVHeadersTable: returns the number of rows (except header).
rows() - Method in interface omix.lang.data.Table: returns the number of table rows.
rows() - Method in interface omix.lang.data.VHeaderTable: returns the number of rows (except vertical header).
rows() - Method in interface omix.plugin.data.DataMatrixInterface: returns the absolute number of rows (incl. header).
RPAREN - Static variable in class omix.mathxp.parser.MathExpressionsLexer
RPAREN - Static variable in class omix.mathxp.parser.MathExpressionsParser
run() - Method in interface omix.util.ui.ThrowingRunnable: This method is called inside of EventLoopParallelAction or ThreadAffineUtility.

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