All Classes
Class | Description |
---|---|
Abstract | |
AbstractAccessManager |
This interface allows to access features of the Omix Plugin Interface
as super type of
ApplicationAccessManager and DocumentAccessManager . |
AbstractApplicationExtension |
This class implements the
ApplicationExtensionInterface with
empty methods. |
AbstractBioNode | |
AbstractBioNode | |
AbstractBioNode | |
AbstractBioNode | |
AbstractBioNodeItem | |
AbstractBioNodeItem | |
AbstractCategoryChart |
This class is superclass of all category charts.
|
AbstractComposedXYDataset<C extends AbstractComposedXYDataset.Coordinate> |
This class represents a X,Y coordinate dataset that has been composed by the user.
|
AbstractComposedXYDataset.Coordinate | |
AbstractConfigWidget |
This abstract class can be derived to realize a member widget of the
configuration dialog window.
|
AbstractControlPoint |
Generalizes all possible control points of a curve.
|
AbstractControlPoint | |
AbstractCSVTable<T> |
This class is superclass for all data type bound CVS table classes.
|
AbstractCurvePoint |
Generalizes all curve describing points.
|
AbstractCurvePoint | |
AbstractDataMatrix |
This class implements listener management of a data matrix and
serves as abstract adapter class for
DataMatrixInterface . |
AbstractDiagramComponent |
This interface generalizes AbstractItem and Group
as allowed members of a network diagram and
additionally of a group.
|
AbstractDocumentExtension |
This class implements the
DocumentExtensionInterface with
empty methods. |
AbstractDomReader |
This class is an abstract definition of a reader using DOM
(Package org.w3c.dom).
|
AbstractDomWriter |
This class is an abstract definition of a writer using DOM
(Package org.w3c.dom).
|
AbstractDoubleVec<T extends AbstractDoubleVec<T>> |
Describes a vector in N dimensional space with double precision.
|
AbstractEdge | |
AbstractEdge | |
AbstractEdge | |
AbstractEdge | |
AbstractEdgeItem | |
AbstractEdgeItem | |
AbstractErrorIndicator |
This class is superclass for all error indicators.
|
AbstractFloatVec<T extends AbstractFloatVec<T>> |
Describes a vector in N dimensional space with float precision.
|
AbstractItem |
This class generalizes all types of visible network components as well as
the network and the model.
|
AbstractItem | |
AbstractItem | |
AbstractItem | |
AbstractLineChartProperties | |
AbstractMathConstant | |
AbstractMathReference | |
AbstractModelComponent | |
AbstractModelComponent | |
AbstractModelIODomHandler |
This class can be used to realize a
ModelIOHandlerInterface for Omix with DOM
(Package org.w3c.dom). |
AbstractModelIOHandler |
This class can be used to realize a
ModelIOHandlerInterface for Omix. |
AbstractModelItem | |
AbstractModelItem | |
AbstractMultiplePieChart | |
AbstractNode | |
AbstractNode | |
AbstractNode | |
AbstractNode | |
AbstractNodeItem | |
AbstractNodeItem | |
AbstractOVLType |
Generalizes OVLItemExtension and OVLClass.
|
AbstractPieChart |
This class is superclass of all pie charts.
|
AbstractPieChart.DataExtractOrder | |
AbstractReader |
This class can be subclassed in order to realize
a file reader.
|
AbstractSideBox |
This accessory represents charts as side items in the network diagram.
|
AbstractSideBox | |
AbstractSideBox | |
AbstractSideBoxItem | |
AbstractSideBoxItem | |
AbstractStackableChart |
This class is superclass of all category charts that can be stacked.
|
AbstractTable<T> |
This class represents a general table format with cells which are accessible by the horizontal header text and an index.
|
AbstractTableXYDataset<T extends XYTableDataReference> |
This class represents a X,Y coordinate dataset that bases on a table from the
DataManager . |
AbstractTitle |
This class is superclass for title and legend.
|
AbstractTitle.Position | |
AbstractVec<T extends AbstractVec<T>> |
Describes a vector in N dimensional space.
|
AbstractVisibleComponent | |
AbstractVisibleComponent | |
AbstractWriter |
This class can be subclassed in order to realize
a file writer.
|
AbstractXYChart<T extends XYDataset> |
This class us superclass of all X,Y coordinate charts in Omix.
|
AbstractXYZChart<T extends XYZDataset> |
This class is superclass of all X,Y,Z coordinate charts.
|
Accessory |
This type represents all accessories available in OVL.
|
Accessory | |
Accessory | |
AccessoryAnchorPlacement | |
AccessoryItem | |
AccessoryItem | |
AccessoryItemOwner | |
AccessoryItemOwner | |
AccessoryOwner | |
AccessoryOwner | |
AnnotationArray<T extends DataAnnotation> | |
AnnotationArray<T extends DataAnnotation> | |
AnnotationArrayItem<T extends DataAnnotationItem> | |
AnnotationArrayItem<T extends DataAnnotationItem> | |
AnnotationChangeEvent | |
AnnotationChangeEvent.ChangeType | |
AnnotationChangeListener | |
APIVersion |
This class represents the minimum Omix API version a plug-in must base on in order to be compatible.
|
ApplicationAccessManager |
This interface allows to access features of the Omix Plugin Interface.
|
ApplicationExtensionFactory |
This interface must be derived by a custom plugin class in order to implement an
application extension.
A custom class implementing ApplicationExtensionFactory
can be registered at the Omix Plugin Manager: |
ApplicationExtensionInterface |
This interface can be implemented in order to realize a global
extension for Omix.
|
Applications |
This enum represents the Application Product
|
Arc |
Represents an arc as curve describing component of an edge.
An arc consists of a center point, radius in X and Y direction, a start angle and a length in degrees. |
Arc | |
ArcSectionComputer2D |
This class represents an arc curve section.
|
AreaChart | |
AreaChartProperties | |
Array<T extends Accessory> |
This type represents accessory arrays.
|
Array<T extends Accessory> | |
Array<T extends Accessory> | |
ArrayItem<T extends AccessoryItem> | |
ArrayItem<T extends AccessoryItem> | |
ArrayWrapper<T> | |
Authenticator |
This interface allows plugins to ask the user for login information.
|
Authenticator.DomainUsernamePassword |
Represents a domain+username/password answer.
|
Authenticator.Password |
Represents a password answer.
|
Authenticator.UsernamePassword |
Represents a username/password answer.
|
Axis |
This class represents an axis in charts.
|
Axis.LabelLocation |
Used to indicate the location of an axis label.
|
Axis.Position | |
BarChart | |
BarChart3D | |
BarChart3DProperties | |
BarChartProperties | |
Bernstein |
Solves the bernstein polynomial.
|
BezierPoint |
Represents a bezier control point of a quad or cubic curve.
|
BezierPoint | |
BezierSectionComputer<T extends AbstractDoubleVec<T>> |
This class represents a Bézier curve section consisting of two (a), three (b) or four (c) control points.
|
BigFraction | |
BioNode |
This type generalizes all common attributes of metabolite and reaction.
This Java interface represents a MetNode in OVL. |
Brush |
This interface represents the brush of diagram components which can be:
Color
Gradient
Fillpattern
Texture
|
BubbleChart | |
Capabilities |
This annotation defines the editability of an annotation.
|
Capabilities.PropertyCapabilities | |
CategoryAxis |
This class represents the horizontal axis in a category chart.
|
CategoryAxis.LabelPosition | |
CategoryChartStyle |
This class contains all visual properties of a category chart.
|
CategoryChartStyle.Anchor | |
CategoryDataset |
This interface represents a category dataset.
|
CategoryTableDataReference |
This class references categorized data from a table.
|
CategoryTableDataReference.SeriesLocation | |
CC<E,N> |
This class represents a connected component inside a graph.
|
ChangeEvent | |
ChangeEvent.EventType | |
ChangeListener | |
Chart |
This class serves as superclass of all chart types available in Omix.
|
ChartChangeListener |
This interface represents a listener for chart changes.
|
ChartProperties | |
ChartSideBox |
This accessory represents charts as side items in the network diagram.
|
ChartSideBox | |
ChartSideBox | |
ChartSideBoxItem | |
ChartSideBoxItem | |
ChartSideItem | Deprecated. |
ChartStyle |
This class represents the style of a chart.
|
ChartStyleElement |
This class is abstract superclass of all chart style elements.
|
CheckButton |
A CheckButton calls a method with a boolean value of its checked state at user action.
|
CheckButton | |
CheckButton | |
CheckButtonItem | |
CheckButtonItem | |
ChemUtility |
This class converts a plain chemical formula to rich text (html).
|
ClassType |
Represents a type in OVL and Java.
|
ClassType | |
Clipping | |
Clipping | |
ClosingWidgetInterface |
An editor cells that implements the ClosingWidgetInterface can
ask the property editor to close the cell.
|
ClosingWidgetInterface.ClosingWidgetListener |
This interface is implemented by Omix and submitted to the ClosingWidget as listener.
|
ClusteredBarChart3DProperties | |
ClusteredBarChartProperties |
Properties of Bar Charts
|
Collections | |
Color |
This class represents color in Omix diagrams.
|
ColorInterpolator |
The
ColorInterpolator class implements interpolation between colors. |
ColorInterpolator.ColorSpace |
This enum list all color spaces available in
ColorInterpolator . |
ColorInterpolator.InterpolationMode |
This enum represents possible color interpolation modes.
|
ColorScheme |
This interface provides a custom color scheme.
|
ColorSchemes |
This enum provides a set of predefined color schemes.
|
ColumnChart | |
ColumnChart3D | |
CombinedUnit | |
Comment | Deprecated. |
Comment | |
Comment | |
Comment.Reply | |
Comment.Reply | |
Comment.Reply | |
Compartment |
Represents a compartment in the metabolic network diagram.
|
Compartment | |
Compartment | |
CompartmentItem | |
CompartmentItem | |
Component |
Superclass of all model components in OVL.
|
ComponentExistsException |
This exception is thrown when a network component is added twice
or a node name already exists.
|
ComposedCategoryDataset | |
ComposedDataset |
This class represents a dataset that has been composed by the user.
|
ComposedXYDataset |
This class represents a X,Y coordinate dataset that has been composed by the user.
|
ComposedXYDataset.CoordinateXY | |
ComposedXYZDataset |
This class represents a X,Y coordinate dataset that has been composed by the user.
|
ComposedXYZDataset.CoordinateXYZ | |
ConfigWidgetFactory<T extends QWidget & ConfigWidgetInterface> |
This interface has to be derived by a custom plugin class in order to implement a
config widget as part of the configuration dialog window.
A custom class implementing ConfigWidgetFactory
can be registered at the Omix Plugin Manager: |
ConfigWidgetInterface |
This interface can be derived to realize a member widget of the
configuration dialog window.
|
Constructor |
This interface represents a constructor of an OVL class.
|
ContextMenuEntryProvider |
By implementing this interface, a plug-in can add own menu entries to the context menu of graphical items.
|
CoreUnitInterface | |
CreateEditorUtilities |
This utility allows access to the
OVLReadAccess interface
and the Settings interface during the method call TypeEditHandlerInterface.createEditor(io.qt.widgets.QWidget, FieldInfo, CreateEditorUtilities) |
CreateGraphicsItemUtilities |
This utility allows access to the
OVLReadAccess interface
during the method call TypeGraphicsHandlerV2Interface.createGraphicsItem(FieldInfo, CreateGraphicsItemUtilities) |
CSVDoubleTable |
This class reads all data of a csv file as double values.
|
CSVIntegerTable |
This class reads all data of a csv file as int values.
|
CSVStringTable |
This class reads all data of a csv file as String values.
|
CursorUtility | |
CurveSectionComputer<T extends AbstractDoubleVec<T>> |
This class generalizes computation of a parameterised curve sections.
|
CustomColorScheme |
Use this type to define a custom color scheme.
|
CustomShape |
This interface represents custom symbol shapes in Omix.
|
CustomUnit | |
CustomUnitManagerInterface | |
DataAnnotation |
This type represents all data annotations available in OVL.
|
DataAnnotation | |
DataAnnotation | |
DataAnnotationItem | |
DataAnnotationItem | |
DataInputUtilities |
Provides utilities for data file input operations.
|
DataManager |
This class represents the data manager sidebar and provides access
to the currently open data sources and tables.
|
DataManager |
This class represents the data manager sidebar and provides access
to the currently open data sources and tables.
|
DataManager.CloseDataSourceEvent | |
DataManager.CurrentDataSourceChangeEvent | |
DataManager.CurrentTableChangeEvent | |
DataManager.DataManagerChangeEvent | |
DataManager.DataManagerChangeListener | |
DataManager.DataManagerSourceChangeEvent | |
DataManager.GeneralDataManagerChangeEvent | |
DataManager.LanguageChangeEvent | |
DataManager.OpenDataSourceEvent | |
DataManager.TableFormatChangeEvent | |
DataMatrixChangeListener | |
DataMatrixInterface | |
DataMatrixInterface.DeletableFlag | |
DataMatrixInterface.DeletableFlags | |
DataMatrixInterface.MetaData | |
DataMatrixInterface.MetaDataType | |
DataMatrixInterface.Representation | |
DataMatrixInterface.Representations | |
DataOutputUtilities |
Provides utilities for data file output operations.
|
Dataset |
This interface represents a chart's dataset.
|
DatasetChangeListener |
This interface represents a listener for dataset changes.
|
DataSourceChangeListener | |
DataSourceHandlerFactory | |
DataSourceHandlerInterface | |
DataSourceInterface | |
DataSourceInterface.Enumerator | |
DataSourceManager | |
DataSourceManager | |
Date |
This class represents date in the Omix network diagrams.
|
DateTime |
This class represents date and time in the Omix network diagrams.
|
DecimalFormat |
This class represents a format pattern for the conversion of floating point numbers to text.
|
DefaultFormats |
This interface contains a set of number-to-string formatters.
|
DerivedUnit | |
Diagram | |
Diagram | |
Diagram.NewNodePosition | |
DockingPosition |
This enum represents all available docking positions at a node in the diagram area.
|
Document |
This interface is supertype for all possible
documents in Omix.
|
DocumentAccessManager |
This interface allows to access features of the Omix Plugin Interface.
|
DocumentExtensionFactory |
This interface has to be derived by a custom plugin class in order to implement a
document extension.
A custom class implementing DocumentExtensionFactory
can be registered at the Omix Plugin Manager: |
DocumentExtensionInterface |
This interface can be implemented in order to realize a document
dependend extension for Omix.
|
DoubleField |
This accessory represents textual represented double values in the network diagram.
|
DoubleField | |
DoubleField | |
DoubleFieldItem | |
DoubleFieldItem | |
DoubleIndexedMap<T> |
This class collects objects in association with two indexes
i and j . |
DoubleMap<T> |
This class is a tree map associating objects to a double value.
|
DoublePlayer |
A DoublePlayer has the same functionality as the
DoubleSlider and, additionally, buttons to increase or decrease the current value with a defined step size and an automatic play routine. |
DoublePlayer | |
DoublePlayer | |
DoublePlayerItem | |
DoublePlayerItem | |
DoubleSlider |
A DoubleSlider controls a bounded real value by sliding a handle.
|
DoubleSlider | |
DoubleSlider | |
DoubleSliderItem | |
DoubleSliderItem | |
DoubleSpinBox |
A DoubleSpinBox consists of a spinable input mask for real numbers.
|
DoubleSpinBox | |
DoubleSpinBox | |
DoubleSpinBoxItem | |
DoubleSpinBoxItem | |
DoubleTrigger |
This type represents all triggers emitting a double type signal.
|
DoubleTrigger | |
DoubleTrigger | |
DoubleTriggerItem | |
DoubleTriggerItem | |
Edge |
Superclass of all edges in Omix.
|
Editable |
This annotation defines the editability of an annotation.
|
EffectorEdge |
Represents an effector edge in the network diagram.
|
EffectorEdge | |
EffectorEdge | |
EffectorEdge | |
EffectorEdge | |
EffectorEdgeItem | |
EffectorEdgeItem | |
Error | |
Error.CustomError | |
Error.ErrorType | |
Error.ErrorTypeInterface | |
Error.ExponentWithUnitError | |
Error.IllegalOperator | |
Error.ImpossibleExponentOnUnitError | |
Error.ImpossibleUnitMultiplicationError | |
Error.MismatchingUnitsError | |
ErrorComposedDataset | |
ErrorTableDataset | |
ErrorTableDataset.ErrorTableReference | |
EventBasedChangeListener |
This class implements the
PropertyChangeListener
in QEventLoop. |
EventBasedItemPropertyChangeListener |
This class implements the
ValueChangeListener
in QEventLoop. |
EventBasedModelChangeListener |
This class implements the
PropertyChangeListener
in QEventLoop. |
EventBasedPropertyChangeListener |
This class implements the
PropertyChangeListener
in QEventLoop. |
EventBasedValueChangeListener |
This class implements the
ValueChangeListener
in QEventLoop. |
EventLoopParallelAction |
This class allows to execute an action in a thread parallel to a running
QEventLoop . |
EventThread | |
ExcludedItems |
This annotation avoids that a set if items is extended by
the annotated item extension or individual field, method or accessory.
|
ExpressionReference | |
ExpressionUtilities | |
ExpressionUtilities.Multiplier | |
ExpressionUtilities.MultiplierList | |
ExpressionUtilities.Summand | |
ExpressionUtilities.SummandList | |
ExtendedHeaderData |
This type can be used to fill table headers in an instance of
DataSourceInterface
with labels that contain background information about the column or row, i.e. possible synonyms and public identifiers. |
Field |
This interface represents a field defined in OVL code.
|
Field |
This interface represents a field defined in OVL code.
|
Field | |
FieldInfo |
This class provides information about the edited field for the
TypeEditHandlerInterface . |
FileDataSourceHandlerInterface | |
FilePathAnalyzer |
This class helps to save file paths relative to the saved file.
|
FillLevelIndication |
This enum contains lists all options to indicate fill levels in nodes.
|
FillPattern |
A fill pattern consists of a pattern and a fill color whereas the pattern can be a standard patterns or any bitmap.
|
FillPattern.Type |
Standard Patterns as offered by the paint dialog.
|
Final | |
FinallyTasks | |
FixedValueError | |
FloatMap<T> |
This class is a tree map associating objects to a float value.
|
FluxEdge |
Represents a flux edge in the network diagram.
|
FluxEdge | |
FluxEdge | |
FluxEdge | |
FluxEdge | |
FluxEdgeItem | |
FluxEdgeItem | |
Font |
This class represents font in the Omix network diagrams.
|
FormattedName | |
FunctionPointer | |
GetValuePainterUtilities |
This utility allows access to the
OVLReadAccess interface
during the method call TypeGraphicsHandlerInterface.getValuePainter(FieldInfo, GetValuePainterUtilities) |
Gradient |
This class is superclass for all color gradients.
|
Gradient.Spread |
This enum lists all available spread for color gradients.
|
Graph<E,N> |
Graph analysis tool.
|
GraphicsBox |
Represents a graphical box in the diagram.
|
GraphicsBox | |
GraphicsBox | |
GraphicsBoxItem | |
GraphicsBoxItem | |
GraphicsEdge |
Represents a custom edge in the network diagram.
|
GraphicsEdge | |
GraphicsEdge | |
GraphicsEdge | |
GraphicsEdge | |
GraphicsEdgeItem | |
GraphicsEdgeItem | |
GraphicsItem | Deprecated. |
GraphicsNode |
This type represents custom nodes in OVL.
|
GraphicsNode | |
GraphicsNode | |
GraphicsNode | |
GraphicsNode | |
GraphicsNodeItem | |
GraphicsNodeItem | |
GraphicsPath |
Represents a graphical path in the diagram.
|
GraphicsPath | |
GraphicsPath | |
GraphicsPathItem | |
GraphicsPathItem | |
GraphicsSceneRenderer |
This class realizes an
ImageRenderer that renders a QGraphicsScene . |
Group | |
Group | |
Groupable | |
Groupable | |
Guideline | |
Guideline | |
HashList<T> | |
HHeaderTable | |
HHeaderTable | |
Hidden |
This annotation avoids visibility of fields and accessories in the property list and/or in the scene.
|
HVHeadersTable | |
HVHeadersTable | |
Icon |
An annotated field is displayed with an icon from the given path.
Examples: @Icon("smile.png") CheckButton button : method(boolean); |
IconManager | |
IconReloadable | |
IdentifierCollection | |
IdentifierCollection.TargetType | |
IdentityComparator |
Compares two objects after identity hashcode.
|
IllegalChangeException | |
IllegalComponentException |
Is thrown when an object is not allowed do be used in a model factory.
|
Image |
Represents images in Omix.
|
ImageField |
This accessory represents image items in the network diagram.
|
ImageField | |
ImageField | |
ImageFieldItem | |
ImageFieldItem | |
ImageRenderer |
This interface can be implemented in order to render any kind of content into
a paint device.
|
IncludedItems |
This annotation limits the applicabity of code to a set if items.
|
InputUtilities |
Provides utilities for file input operations.
|
IntegerField |
This accessory represents textual represented integer values in the network diagram.
|
IntegerField | |
IntegerField | |
IntegerFieldItem | |
IntegerFieldItem | |
IntegerTrigger |
This type represents all triggers emitting an integer type signal.
|
IntegerTrigger | |
IntegerTrigger | |
IntegerTriggerItem | |
IntegerTriggerItem | |
InterfaceUtility | |
IntMap<T> |
This class is a tree map associating objects to an int value.
|
IOFlag |
This enum represents I/O operations.
|
IsRichText |
This annotation marks a String flield to contain rich text (HTML).
|
IsVarType |
This annotation can be used to indicate that a specific
java class member or parameter is of JavaScript type var.
|
Item | Deprecated. |
ItemGroup |
Item group can is the only and exclusive data annotation for the network level.
|
ItemGroup | |
ItemGroup | |
ItemGroupItem | |
ItemGroupItem | |
ItemPropertyChangeListener |
This class implements the
ValueChangeListener
with a PropertyChangeListener . |
ItemReference | |
JsonArray | |
JsonObject | |
Label |
Overrides the identifier of the annotated field or trigger with the denoted label.
Two examples without Label annotation: |
LabelConfiguration | |
LabelConfiguration.DefaultTextInstruction | |
LabelConfiguration.TextInstruction | |
LabelReloadable | |
LabelText | |
Legend | |
Legend | |
Legend | |
LicenseKey |
This class represents all entries of an Omix license key file.
|
LicenseKeyValidatorFactory |
This interface can be implemented in order to realize licensing
of a plugin.
|
LicenseKeyValidatorInterface |
The license key validator checks the signature of a license key for validity.
|
LicenseRequired |
This annotation labels classes as to require a valid license key
in order to be used in OVL scripts.
|
LicenseType |
This enum replresents all available licensing variants.
|
LinearGradient |
This class represents linear gradients.
|
LineChart | |
LineChart3D | |
LineChart3DProperties | |
LineChartProperties | |
Link |
This type represents a link node in OVL.
|
Link | |
Link | |
Link.Appearance | |
Link.Appearance | |
Link.DiagramLinkAppearance | |
Link.DiagramLinkAppearance | |
Link.FileLinkAppearance | |
Link.FileLinkAppearance | |
Link.GeneralLinkAppearance | |
Link.GeneralLinkAppearance | |
Link.PathwayLinkAppearance | |
Link.PathwayLinkAppearance | |
LinkEdge |
Represents a custom edge in the network diagram.
|
LinkEdge | |
LinkEdge | |
LinkEdge.Appearance | |
LinkEdge.Appearance | |
LinkEdge.EffectorEdgeAppearance | |
LinkEdge.EffectorEdgeAppearance | |
LinkEdge.FluxEdgeAppearance | |
LinkEdge.FluxEdgeAppearance | |
LinkEdge.GraphicsEdgeAppearance | |
LinkEdge.GraphicsEdgeAppearance | |
LinkEdgeItem | |
LinkEdgeItem | |
LinkItem | |
LinkItem | |
MarkerShape |
This interface lists all standard shapes available for start and end markers of edges.
|
MathConstant | |
MathConstant2D | |
MathConstantEULERGAMMA | |
MathConstantEXPONENTIALE | |
MathConstantFALSE | |
MathConstantIMAGINARYI | |
MathConstantINFINITY | |
MathConstantNaN | |
MathConstantPI | |
MathConstantTRUE | |
MathExpression | |
MathExpressionsLexer | |
MathExpressionsLexer.ErrorMessage | |
MathExpressionsParser | |
MathExpressionsParser.UnexpectedCharactersException | |
MathExpressionsParser.UnitNotAllowedException | |
MathFunction | |
MathFunction.FunctionProcessorInterface | |
MathFunction2D | |
MathGraphicsView | |
MathItem2DInterface | |
MathLambdaExpression | |
MathLambdaExpression.Parameter | |
MathMLElement | |
MathMLException | |
MathMLNamespace | |
MathMLReader | |
MathMLWriter | |
MathOperation | |
MathOperation.Operator | |
MathOperation2D | |
MathParent2DInterface | |
MathPointer | |
MathReference | |
MathReference2D | |
MathRoot2D | |
MathScene2D | |
MathSymbolReaderInterface | |
MathSymbolWriterInterface | |
MathTypeHandler | |
MathUnit2D | |
MathUtilities | |
Matrix2d |
This class is a 2 × 2 matrix with double precision.
|
Matrix2f |
This class is a 2 × 2 matrix with double precision.
|
Matrix4d |
This class is a 4 × 4 matrix with double precision.
|
Matrix4d.RotationType |
Describes the type of rotation matrix.
|
Matrix4f |
This class is a 4 × 4 matrix with double precision.
|
Matrix4f.RotationType |
Describes the type of rotation matrix.
|
Member |
This is the super type of all class and extension members.
|
MessageCollector |
This class collects messages.
|
MessageType |
Represents the types of messages from a plugin.
|
MetabolicNetwork | Deprecated. |
Metabolite |
Represents all instances of a metabolite pool
in the metabolic network diagram.
|
Metabolite | |
Metabolite | |
Metabolite | |
Metabolite | |
MetaboliteItem | |
MetaboliteItem | |
MetaboliteType |
This class represents the type of metabolites in different compartments.
|
MetaboliteType |
This class represents metabolite types of a biochamical model.
|
MetaboliteType | |
Method |
This interface represents a method defined in OVL code.
|
MetNode | Deprecated. |
Model |
This class represents the network model.
|
Model |
This method represents the complete network model.
|
Model |
The writable model can be used to create and add additional components to a network model document.
|
ModelCapabilities | |
ModelCapability | |
ModelChangeEvent | |
ModelChangeListener | |
ModelComponentProviderFactory | |
ModelComponentProviderInterface | |
ModelComponentProviderInterface.ItemType | |
ModelDocument |
This interface type represents an active network model document.
|
ModelIOHandlerFactory |
This interface must be derived by a custom plugin class in order to implement
an import and/or export filter for Omix networks.
A custom class implementing ModelIOHandlerFactory
can be registered at the Omix Plugin Manager: |
ModelIOHandlerInterface |
This interface allows to realize a network import and export
plugin.
Implementing classes must register a set of supported file name suffixes (like "xml", "fml", "doc"). |
ModelReader |
By implementing this interface, a plugin can realize a model reading procedure.
|
ModelTemplateInfo | |
ModelTemplateProviderFactory | |
ModelTemplateProviderInterface | |
ModelWriter |
By implementing this interface, a plugin can realize a model writing procedure.
|
MotifStamp | |
MotifStamp | |
MoviePaintDeviceInterface |
This interface must be implemented in order to realize
a movie export feature for Omix.
|
MultiplePieChart | |
MultiplePieChart3D | |
MultiplePieChartStyle | |
MultipleRingChart | |
NameUtilities | |
Network | Deprecated. |
Node |
Superclass of all nodes in Omix.
|
NodeLabelPlacement | |
NonNull |
A field annotated with
@NonNull must not be null . |
NoSuchLocalVariableException |
This exception is thrown when OVL code takes access to a local variable that does not exist.
|
NoSuchUnitException | |
NotExecutableException | |
ObjectField<T> |
This accessory represents textual represented Object values in the network diagram.
|
ObjectField<T> | |
ObjectField<T> | |
ObjectFieldItem<T> | |
ObjectFieldItem<T> | |
ObjectMap<T> |
This class is a tree map associating objects to other objects sorted after identity hashcode.
|
Occurrence |
This enum represents possible occurrence of fields and accessories in Omix.
|
OmixApplication |
The OmixApplication class contains static methods which allow:
Internationalization
Inter namespace access
|
OrdinaryDataSourceHandlerInterface | |
Orientation |
This enum represents the two states orientation.
|
OutputUtilities |
Provides utilities for file output operations.
|
OVLAbstractInvokableDefinition |
This interface represents invokeable members of an OVL type.
|
OVLAbstractMemberDefinition |
This class represents the definition of a member
of a class or item extension.
|
OVLAccessoryArrayDefinition | |
OVLAccessoryDefinition |
This class represents an accessory definition in an OVL program.
|
OVLClass |
This interface represents OVLClass definitions in OVL programs.
|
OVLClassType |
This class represents the type of an OVL defined class.
|
OVLCompatibilityHandlerFactory |
This interface must be derived by a custom plug-in class in order to implement
OVL code compatibility between different versions of a plug-in.
|
OVLCompatibilityHandlerInterface |
This interface allows to implement compatibility features of a plug-in with its
former versions.
|
OVLCompatibilityHandlerInterface.OVLFieldConverterInterface |
The substitution is performed by this interface.
|
OVLCompatibilityHandlerInterface.Substitution |
A Substitution consisting of the namespace of the new class/field/accessory
and the new name of the member.
|
OVLCompiler |
This interface allows to compile source code to an executable
OVLProgram.
|
OVLCompilerMessage |
Compiler Messages generated by the OVLCompiler when errors or warning occur.
|
OVLCompilerMessage.Type | |
OVLConstructorDefinition |
This class represents a method definition in an OVL program.
|
OVLDocument |
This interface type represents an active OVL program code document.
|
OVLEnvironment |
Java methods and constructors can be equipped with a prepend
OVLEnvironment parameter. |
OVLEvent |
This java annotation converts a java method into an OVL slot field.
|
OVLExtensible |
This annotation marks all types which are extensible by OVL code.
|
OVLFallbackField |
This java annotation converts a java method into an OVL fallback field.
|
OVLField |
This java annotation converts a java method into an OVL field.
|
OVLFieldConverterUtilities | |
OVLFieldDefinition |
This class represents a field definition in an OVL program.
|
OVLInaccessible |
This java annotation avoids accessibility of a member, parameter or class in OVL code.
|
OVLItemExtension |
This interface represents OVLItemExtension definitions in OVL programs.
|
OVLMethodDefinition |
This class represents a method definition in an OVL program.
|
OVLObject |
This interface represents all instances of OVL defined classes.
|
OVLObject | |
OVLObject | |
OVLParameter | |
OVLParameterDefinition |
This class represents the definition of a method or constructor parameter.
|
OVLProgram |
This interface represents a program specified in the
Omix Visualization Language (OVL).
|
OVLTarget | |
OVLTarget.OVLElementType | |
OVLToAWTConverter |
This class realizes converter functionality between Java AWT and the OVL standard types.
|
Paint |
This interface represents the paint of diagram component which can be:
Brush
Color
Gradient
Fillpattern
Texture
Image
PaintedProperty
|
PaintableObject |
A PaintableObject is a type that is carried by a
PaintProxy painted in a TypeGraphicsHandlerInterface . |
PaintDeviceInterface |
This interface must be implemented in order to realize
an image export feature for Omix.
|
PaintedProperty |
This class represents a painted property in Omix diagrams.
|
PaintException |
A PaintException can occur during a paint procedure of a plugin PaintHandler.
|
PaintHandlerFactory |
This interface must be derived by a custom plugin class in order to implement
export of network diagrams into images and movies of various types.
A custom class implementing PaintHandlerFactory
can be registered at the Omix Plugin Manager: |
PaintHandlerInterface |
This interface can be derived in order to implement exporting the
network diagram into images and movies.
|
PaintHandlerInterface.PaintOption |
Options of a PaintDevice
|
PaintProxy<T extends PaintableObject> |
A PaintProxy contains a paintable object in Omix diagrams.
|
PaintValueUtilities |
This utility allows access to the
OVLReadAccess interface
and the Settings interface during the method call TypeEditHandlerInterface.paintCell(FieldInfo, PaintValueUtilities) |
ParameterConverter | |
Pathway |
Represents a pathway in the metabolic network diagram.
|
Pathway | |
Pathway | |
PathwayItem | |
PathwayItem | |
PatternBranch | |
PatternBranch | |
PatternItem | |
PatternItem | |
PatternPath | |
PatternPath | |
PercentageError | |
PieChart | |
PieChart3D | |
PieChartProperties | |
PieChartStyle | |
PieChartStyle.LinkStyle | |
PixmapManager | |
PlatformFontConverter | |
Player |
A Player has the same functionality as the
Slider and, additionally, buttons to increase or decrease the current value with a defined step size and an automatic play routine. |
Player | |
Player | |
PlayerItem | |
PlayerItem | |
PluginCompatibilityHandlerFactory |
This interface must be derived by a custom plug-in class in order to implement
compatibility when a plug-in identifier changed.
|
PluginCompatibilityHandlerInterface |
This interface allows to implement compatibility features of a plug-in in case of changing plug-in identifier.
|
PluginMenuItemType |
Menus in the menubar.
|
PluginToolbarItemType |
Actions on the toolbars.
|
PopupMenuAction |
Realizes an action that contains a popup action.
|
Private | |
ProgressListener |
Utility that allows to change the progress displayed in
a progress bar during a file I/O operation.
|
Protected | |
Public | |
PublicIdentifier |
This type represents a public identifier.
|
PublicIdentifier | |
PublicIdentifierManager | |
PublicIdentifierProviderFactory | |
PublicIdentifierProviderInterface | |
PushButton |
A
PushButton calls a parameterless method or any parameterized method at user action. |
PushButton | |
PushButton | |
PushButtonItem | |
PushButtonItem | |
QPainterUtil | |
QPainterUtil.RestoreMacro | |
QPaintGraphics2D |
This class realizes AWT Graphics2D drawing everything on a QPainter.
|
QtAWTConverter |
This class realizes converter functionality between Qt and standard Java AWT.
|
QtOVLConverter |
This class realizes converter functionality between Qt and the OVL standard types.
|
Qualifier | |
RadialGradient |
This class represents radial gradients.
|
RawData |
This class represents data in combination with the data format given as file suffix.
|
Reaction |
This type represents reactions in OVL.
|
Reaction | |
Reaction | |
ReactionItem | |
ReactionItem | |
ReadOnly |
Forbids editing the annotated field in the property editor of Omix.
|
ReadOnlyInterface | |
RectangleEdge |
This enum represents the possible locations of char title and legend.
|
ReferenceInterface | |
ReplacedBy |
This annotation should be used in combination with
Deprecated and provide information about the replacement
of a deprecated method or class. |
ReversibilityDesign | |
RingChart | |
ScalingDataMap |
This class allows to scale a set of real numbers into a certain range.
|
ScatterPlot | |
ScatterPlotProperties | |
SCC<E,N> | |
Separator |
Represents a separator point (move to).
|
Separator | |
Settings |
This interface allows to store and read properties in the Omix settings file.
|
Shadow |
This class represents a drop shadow effect on network items.
|
Shape |
This interface lists all standard shapes available for nodes.
|
ShapeExpansionMode | |
ShapeUtility |
This class provides miscellaneous computation methods for shapes.
|
SideBox |
A sub node has the same appearance as other nodes in the network.
|
SideBox | |
SideBox | |
SideBoxItem | |
SideBoxItem | |
Signal |
This annotation specifies the signal type of accessories.
|
SilentAbort |
This runtime exception can be thrown in order to abort
a user operation without causing an error dialog.
SilentAbort is useful if plugin code handles an occurring error by own error dialogs. |
SimpleValueField |
This accessory represents textual represented values in the network diagram.
|
SimpleValueField | |
SimpleValueField | |
SimpleValueFieldItem | |
SimpleValueFieldItem | |
SIPrefix | |
SIUnit | |
Slider |
A Slider controls a bounded real value by sliding a handle.
|
Slider | |
Slider | |
SliderItem | |
SliderItem | |
Smoothness |
This enum lists all available smoothness settings of spline points.
|
SortedTreeMap<A,B> |
This class is a tree map associating objects to other objects sorted after identity hashcode.
|
SpinBox |
A SpinBox consists of a spinable input mask for real numbers.
|
SpinBox | |
SpinBox | |
SpinBoxItem | |
SpinBoxItem | |
SplinePoint |
Represents a spline point connecting curve segments.
|
SplinePoint | |
StackMode |
This enum represents possible stack modes of bar charts.
|
StandardIcons | |
StandardIdentifierCollection | |
StandardMarkerShapes |
This class implements the MarkerShape interface.
|
StandardModelIODomHandler |
Realizes XML reading and writing with a
DocumentBuilder and Transformer . |
StandardShapes |
This class implements the Shape interface.
|
StandardStreams |
This class contains the original streams from
System . |
StringComparator |
Compares two strings.
|
StringMap<T> |
This class is a tree map associating objects to a string alphabetically sorted.
|
StrokeStyle |
This class represents style of edges and strokes.
|
StyleSheet | |
StyleSheet | |
SubNode | Deprecated. |
SubTitleStyle | |
Suffix |
The value of the annotated member is displayed with the given unit.
Examples: @Unit("m") double distance = 25.0; |
Synchronized | |
SynchronousChangeListener |
This class implements the
ChangeListener
in thread-safe manner. |
SynchronousItemPropertyChangeListener |
This class implements the
ValueChangeListener
in thread-safe manner. |
SynchronousModelChangeListener |
This class implements the
ModelChangeListener
in thread-safe manner. |
SynchronousValueChangeListener |
This class implements the
ValueChangeListener
in thread-safe manner. |
Synonym | |
Synonyms | |
SystemInfo |
This class offers information about the platform's operation system and architecture.
|
SystemInfo.Architecture |
This enum represents the possible processor architectures.
|
SystemInfo.OperatingSystem |
This enum represents the operation systems that can execute Omix.
|
Table |
This interface represents a table in the data manager sidebar.
|
Table |
This interface represents a table in the data manager sidebar
available for mutation within plug-ins.
|
Table.SelectedCell |
This class represents a selected cell in the table
|
Table.SelectedColumn |
This class represents a selected cell in the table
|
Table.SelectedContent |
This class represents a selected content (cell, row or column) in the table
|
Table.SelectedRow |
This class represents a selected cell in the table
|
Table.SelectedTable |
This class represents the state where the entire table is selected
|
TableCategoryDataset |
This class represents a category dataset that bases on a table from the
DataManager . |
TableDataReference |
This class references data from a table.
|
TableDataset<T extends TableDataReference> |
This class represents a dataset that bases on a table from the
DataManager . |
TableXYDataset |
This class represents a X,Y coordinate dataset that bases on a table from the
DataManager . |
TableXYZDataset |
This class represents a X,Y,Z coordinate dataset that bases on a table from the
DataManager . |
TargetToolBar | |
TextField |
This accessory represents text labels in the network diagram.
|
TextField | |
TextField | |
TextFieldItem | |
TextFieldItem | |
Texture |
This class represents textures in the network diagram.
|
Texture.Scaling |
This enum lists all avaliable scaling methods.
|
ThreadableSlot0 | |
ThreadableSlot1<A> | |
ThreadAffineUtility | |
ThrowingBooleanSupplier<E extends Throwable> |
This interface must be implemented to perform an arbitrary action
in a parallel thread.
|
ThrowingByteSupplier<E extends Throwable> |
This interface must be implemented to perform an arbitrary action
in a parallel thread.
|
ThrowingCallable<A,E extends Throwable> |
This interface can be implemented to perform an arbitrary action taking argument
in a parallel thread.
|
ThrowingCallable2<A,B,E extends Throwable> |
This interface can be implemented to perform an arbitrary action taking argument
in a parallel thread.
|
ThrowingCallable3<A,B,C,E extends Throwable> |
This interface can be implemented to perform an arbitrary action taking argument
in a parallel thread.
|
ThrowingCharSupplier<E extends Throwable> |
This interface must be implemented to perform an arbitrary action
in a parallel thread.
|
ThrowingDoubleSupplier<E extends Throwable> |
This interface must be implemented to perform an arbitrary action
in a parallel thread.
|
ThrowingFloatSupplier<E extends Throwable> |
This interface must be implemented to perform an arbitrary action
in a parallel thread.
|
ThrowingFunction<R,A,E extends Throwable> |
This interface can be implemented to perform an arbitrary action taking argument
in a parallel thread.
|
ThrowingFunction2<R,A,B,E extends Throwable> |
This interface can be implemented to perform an arbitrary action taking argument
in a parallel thread.
|
ThrowingFunction3<R,A,B,C,E extends Throwable> |
This interface can be implemented to perform an arbitrary action taking argument
in a parallel thread.
|
ThrowingFunction4<R,A,B,C,D,E extends Throwable> |
This interface can be implemented to perform an arbitrary action taking argument
in a parallel thread.
|
ThrowingFunction5<R,A,B,C,D,E,Exn extends Throwable> |
This interface can be implemented to perform an arbitrary action taking argument
in a parallel thread.
|
ThrowingIntSupplier<E extends Throwable> |
This interface must be implemented to perform an arbitrary action
in a parallel thread.
|
ThrowingLongSupplier<E extends Throwable> |
This interface must be implemented to perform an arbitrary action
in a parallel thread.
|
ThrowingRunnable<E extends Throwable> |
This interface can be implemented to perform an arbitrary action
in a parallel thread.
|
ThrowingShortSupplier<E extends Throwable> |
This interface must be implemented to perform an arbitrary action
in a parallel thread.
|
ThrowingSupplier<T,E extends Throwable> |
This interface must be implemented to perform an arbitrary action
in a parallel thread.
|
Thumbnails |
This interface represents thumbnails containes in Omix files.
|
Time |
This class represents a time in the Omix network diagrams.
|
Title | |
ToolTip |
Omix displays the given tooltip when the mouse hovers
the property line of the annotated field or
the accessory in scene or on the toolbar of the main window.
Example: @ToolTip("Enter a text") String text = ""; |
Transient | |
Translating |
This interface represents the translation mechanism of Omix.
|
Trigger |
This type represents all triggers available in OVL.
|
Trigger | |
Trigger | |
TriggerArray<T extends Trigger> | |
TriggerArray<T extends Trigger> | |
TriggerArrayItem<T extends TriggerItem> | |
TriggerArrayItem<T extends TriggerItem> | |
TriggerItem | |
TriggerItem | |
TypeCompatibilityHandlerFactory |
This interface must be derived by a custom plug-in class in order to implement
type compatibility between different versions of a plug-in.
A custom class implementing TypeCompatibilityHandlerFactory
can be registered at the Omix Plug-in Manager: |
TypeCompatibilityHandlerInterface |
This interface allows to implement compatibility features of a plug-in with its
former versions.
|
TypeEditHandlerFactory |
This interface must be derived by a custom plugin class in order to implement
type editing features.
A custom class implementing TypeEditHandlerFactory
can be registered at the Omix Plugin Manager: |
TypeEditHandlerInterface |
This interface allows to implement management of arbitrary
data types in the property editor (see image below).
|
TypeEditHandlerInterface.CellEditorResponse |
This class returns a cell editor widget.
|
TypeEditHandlerInterface.CellPainterInterface |
This interface can be implemented in order to paint a table cell
of the property editor according a specific object content.
|
TypeEditHandlerInterface.DialogEditorInterface |
The editor dialog is executed via
TypeEditHandlerInterface.DialogEditorInterface.exec() . |
TypeEditHandlerInterface.DialogEditorResponse |
This class returns a dialog editor as user interface for property editing.
|
TypeEditHandlerInterface.EditResponse |
Generalizes all possible results of
TypeEditHandlerInterface.createEditor(QWidget, FieldInfo, CreateEditorUtilities) . |
TypeEditHandlerInterface.NoEditorResponse |
This class can be used when an field must not be edited.
|
TypeEditHandlerInterface.ObjectEditorInterface |
This interface must be implemented by a valid cell editor widget.
|
TypeEditHandlerInterface.PaintResponse |
Answer of a
TypeEditHandlerInterface.paintCell(FieldInfo, PaintValueUtilities) request. |
TypeGraphicsHandlerFactory |
This interface must be derived by a custom plugin class in order to implement
type painting features.
A custom class implementing TypeGraphicsHandlerFactory
can be registered at the Omix Plugin Manager: |
TypeGraphicsHandlerInterface |
This interface allows to implement painting of specific object types
in accessory
ObjectField
and in Visualization on Demand (VoD). |
TypeGraphicsHandlerInterface.ResizableValuePainterInterface |
This interface represents paint content that can be resized in a ObjectField<>.
|
TypeGraphicsHandlerInterface.ValuePainterInterface |
This interface must be derived in order to realize
painting of custom object types.
|
TypeGraphicsHandlerInterface.ValuePainterInterface.ResizeListenerInterface | |
TypeGraphicsHandlerInterface.ValuePainterInterface.UpdateListenerInterface | |
TypeGraphicsHandlerV2Interface |
This interface allows to represent specific object types as
QGraphicsItem
in the scene needed in accessory ObjectField
and in Visualization on Demand (VoD). |
TypeGraphicsHandlerV2Interface.ClippableInterface | |
TypeSerializationHandlerFactory |
This interface must be derived by a custom plugin class in order to implement
type save and restore features.
A custom class implementing TypeSerializationHandlerFactory
can be registered at the Omix Plugin Manager: |
TypeSerializationHandlerInterface | |
TypeSerializationHandlerInterface.AbstractSerialization |
Supertype for all serialization types.
|
TypeSerializationHandlerInterface.ComponentArraySerialization |
An Object is serialized as array of its components.
Here, recursive references are not allowed. |
TypeSerializationHandlerInterface.ComponentMapSerialization |
An Object is serialized as map (String,Object) of its components.
Here, recursive references are not allowed. |
TypeSerializationHandlerInterface.DoubleSerialization |
An Object is serialized as
double value. |
TypeSerializationHandlerInterface.IntSerialization |
An Object is serialized as
int value. |
TypeSerializationHandlerInterface.LongSerialization |
An Object is serialized as
long value. |
TypeSerializationHandlerInterface.RawDataSerialization |
An Object is serialized as
byte[] value. |
TypeSerializationHandlerInterface.StringSerialization |
An Object is serialized as String.
|
UnchangeableValue |
This annotation marks a class type unchangeable.
|
UndoableAction |
Represents an undoable command.
|
UndoMacro | |
Unit | Deprecated. |
UnitCheckMessageCollectorInterface | |
UnitCheckMessageCollectorInterface.UnitCheckMessage | |
UnitCheckMessageCollectorInterface.UnitCheckMessage.MessageType | |
UnitFactor | |
UnitInterface | |
UnitReaderInterface | |
UnitUtilities | |
UnitWriterInterface | |
URLConnectionHandlerFactory |
This interface must be derived by a custom plugin class in order to implement
network communication for Omix.
A custom class implementing URLConnectionHandlerInterface
can be registered at the Omix Plugin Manager: |
URLConnectionHandlerInterface |
This interface allows to realize network communication for Omix.
|
URLConnectionInterface |
This interface represents the network communication manager for a certain protocol.
|
URLUtility | |
UserRequest |
This interface offers access to Omix dialog widgets for messaging and user input in OVL scripts.
|
Validating |
A field annotated with
@Validating(»validator type«) is always checked by the
Validator if assigned values are valid. |
Validator |
A validator can be connected to a normal field declaration in OVL.
|
ValueAxis | |
ValueAxis.AxisType | |
ValueChangeAdapter |
This class implements the
ValueChangeListener . |
ValueChangeListener |
A value change listener can be added to
ValueChangeSender s (like Field ). |
ValueChangeSender |
A value change sender can be connected to
ValueChangeListener s. |
Var |
This class type represents the JavaScript type var.
|
VariableNotFoundException | |
VariableReference | |
Vec2d |
Describes a vector in 2 dimensional space.
|
Vec2f |
Describes a vector in 2 dimensional space.
|
Vec4d |
Describes a vector in 3 dimensional space (homogeneous coordinates).
|
Vec4f |
Describes a vector in 3 dimensional space (homogeneous coordinates).
|
VersionNumber |
Version number consisting of a MAJOR, MINOR and PATCH version number.
|
VerticalAlignment | |
VHeaderTable | |
VHeaderTable | |
VoDObject |
The VoDObject type can be used to show a generic and resizable set of properties in Visualization On Demand.
|
VoDObject | |
VoDObjectFactory | |
WeakCollection<E> | |
WeakList<E> | |
WeakMap<K,V> | |
WeakSet<E> | |
WeakWeakMap<K,V> | |
WidgetDialog | |
Wrappable | |
Wrapper | |
WritableInterface | |
XYAreaChart | |
XYChartProperties | |
XYChartStyle | |
XYCurveChart | |
XYDataset |
This interface represents a X,Y coordinate dataset.
|
XYLineChart | |
XYLineChartProperties | |
XYTableDataReference |
This class references X,Y coordinate data from a table.
|
XYTableDataReference.CoordinateLocation | |
XYZDataset |
This interface represents a X,Y,Z coordinate dataset.
|
XYZTableDataReference |
This class references X,Y,Z coordinate data from a table.
|