Index

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All Classes|All Packages

M

MacOSX - omix.util.SystemInfo.OperatingSystem

main(String[]) - Static method in class omix.util.APIVersion

main(String[]) - Static method in class omix.util.VersionNumber

MAJOR_VERSION - Static variable in class omix.util.APIVersion

majorVersion - Variable in class omix.util.VersionNumber

MAJOR version number

mAMP() - Method in class omix.mathxp.parser.MathExpressionsLexer

MarkerShape - Interface in omix.lang

This interface lists all standard shapes available for start and end markers of edges.

MathConstant - Class in omix.mathxp

MathConstant(Number) - Constructor for class omix.mathxp.MathConstant

MathConstant(Number, int, int) - Constructor for class omix.mathxp.MathConstant

MathConstant(MathConstant) - Constructor for class omix.mathxp.MathConstant

MathConstant(UnitInterface, Number) - Constructor for class omix.mathxp.MathConstant

MathConstant(UnitInterface, Number, int, int) - Constructor for class omix.mathxp.MathConstant

MathConstant2D - Class in omix.mathxp.ui.scene

MathConstant2D(MathParent2DInterface, AbstractMathConstant, boolean) - Constructor for class omix.mathxp.ui.scene.MathConstant2D

MathConstantEULERGAMMA - Class in omix.mathxp

MathConstantEULERGAMMA() - Constructor for class omix.mathxp.MathConstantEULERGAMMA

MathConstantEULERGAMMA(int, int) - Constructor for class omix.mathxp.MathConstantEULERGAMMA

MathConstantEXPONENTIALE - Class in omix.mathxp

MathConstantEXPONENTIALE() - Constructor for class omix.mathxp.MathConstantEXPONENTIALE

MathConstantEXPONENTIALE(int, int) - Constructor for class omix.mathxp.MathConstantEXPONENTIALE

MathConstantFALSE - Class in omix.mathxp

MathConstantFALSE() - Constructor for class omix.mathxp.MathConstantFALSE

MathConstantFALSE(int, int) - Constructor for class omix.mathxp.MathConstantFALSE

MathConstantIMAGINARYI - Class in omix.mathxp

MathConstantIMAGINARYI() - Constructor for class omix.mathxp.MathConstantIMAGINARYI

MathConstantIMAGINARYI(int, int) - Constructor for class omix.mathxp.MathConstantIMAGINARYI

MathConstantINFINITY - Class in omix.mathxp

MathConstantINFINITY() - Constructor for class omix.mathxp.MathConstantINFINITY

MathConstantINFINITY(int, int) - Constructor for class omix.mathxp.MathConstantINFINITY

MathConstantINFINITY(UnitInterface) - Constructor for class omix.mathxp.MathConstantINFINITY

MathConstantINFINITY(UnitInterface, int, int) - Constructor for class omix.mathxp.MathConstantINFINITY

MathConstantNaN - Class in omix.mathxp

MathConstantNaN() - Constructor for class omix.mathxp.MathConstantNaN

MathConstantNaN(int, int) - Constructor for class omix.mathxp.MathConstantNaN

MathConstantPI - Class in omix.mathxp

MathConstantPI() - Constructor for class omix.mathxp.MathConstantPI

MathConstantPI(int, int) - Constructor for class omix.mathxp.MathConstantPI

MathConstantTRUE - Class in omix.mathxp

MathConstantTRUE() - Constructor for class omix.mathxp.MathConstantTRUE

MathConstantTRUE(int, int) - Constructor for class omix.mathxp.MathConstantTRUE

MathExpression - Class in omix.mathxp

MathExpression() - Constructor for class omix.mathxp.MathExpression

MathExpression(int, int) - Constructor for class omix.mathxp.MathExpression

MathExpression(MathExpression) - Constructor for class omix.mathxp.MathExpression

MathExpressionsLexer - Class in omix.mathxp.parser

MathExpressionsLexer() - Constructor for class omix.mathxp.parser.MathExpressionsLexer

MathExpressionsLexer(CharStream) - Constructor for class omix.mathxp.parser.MathExpressionsLexer

MathExpressionsLexer(CharStream, RecognizerSharedState) - Constructor for class omix.mathxp.parser.MathExpressionsLexer

MathExpressionsLexer.ErrorMessage - Class in omix.mathxp.parser

MathExpressionsParser - Class in omix.mathxp.parser

MathExpressionsParser(TokenStream) - Constructor for class omix.mathxp.parser.MathExpressionsParser

MathExpressionsParser(TokenStream, RecognizerSharedState) - Constructor for class omix.mathxp.parser.MathExpressionsParser

MathExpressionsParser.UnexpectedCharactersException - Exception in omix.mathxp.parser

MathExpressionsParser.UnitNotAllowedException - Exception in omix.mathxp.parser

MathFunction - Class in omix.mathxp

MathFunction(String, List<MathExpression>) - Constructor for class omix.mathxp.MathFunction

MathFunction(String, List<MathExpression>, int, int) - Constructor for class omix.mathxp.MathFunction

MathFunction(MathFunction) - Constructor for class omix.mathxp.MathFunction

MathFunction.FunctionProcessorInterface - Interface in omix.mathxp

MathFunction2D - Class in omix.mathxp.ui.scene

MathFunction2D(MathParent2DInterface, MathFunction, boolean) - Constructor for class omix.mathxp.ui.scene.MathFunction2D

MathGraphicsView - Class in omix.mathxp.ui.scene

MathGraphicsView(QWidget, List<MathExpression>, Map<String, String>, ApplicationAccessManager) - Constructor for class omix.mathxp.ui.scene.MathGraphicsView

MathGraphicsView(QWidget, List<MathExpression>, Map<String, String>, DocumentAccessManager) - Constructor for class omix.mathxp.ui.scene.MathGraphicsView

MathGraphicsView(QWidget, MathScene2D, ApplicationAccessManager) - Constructor for class omix.mathxp.ui.scene.MathGraphicsView

MathGraphicsView(QWidget, MathScene2D, DocumentAccessManager) - Constructor for class omix.mathxp.ui.scene.MathGraphicsView

MathItem2DInterface - Interface in omix.mathxp.ui.scene

MathLambdaExpression - Class in omix.mathxp

MathLambdaExpression(List<MathLambdaExpression.Parameter>, MathExpression) - Constructor for class omix.mathxp.MathLambdaExpression

MathLambdaExpression.Parameter - Class in omix.mathxp

MATHML_1998_NAMESPACE - Static variable in interface omix.mathxp.io.MathMLNamespace

MathMLElement - Class in omix.mathxp.io

MathMLElement() - Constructor for class omix.mathxp.io.MathMLElement

MathMLException - Exception in omix.mathxp.io

MathMLException(Exception) - Constructor for exception omix.mathxp.io.MathMLException

MathMLException(String) - Constructor for exception omix.mathxp.io.MathMLException

MathMLException(String, Exception) - Constructor for exception omix.mathxp.io.MathMLException

MathMLNamespace - Interface in omix.mathxp.io

MathMLReader - Class in omix.mathxp.io

MathMLReader() - Constructor for class omix.mathxp.io.MathMLReader

MathMLReader(MathSymbolReaderInterface, UnitReaderInterface, Map<String, ReferenceInterface>) - Constructor for class omix.mathxp.io.MathMLReader

MathMLWriter - Class in omix.mathxp.io

MathMLWriter(Document, MathSymbolWriterInterface, UnitWriterInterface, Map<ReferenceInterface, String>) - Constructor for class omix.mathxp.io.MathMLWriter

MathOperation - Class in omix.mathxp

MathOperation(MathOperation.Operator, int, MathExpression) - Constructor for class omix.mathxp.MathOperation

MathOperation(MathOperation.Operator, MathExpression) - Constructor for class omix.mathxp.MathOperation

MathOperation(MathOperation.Operator, MathExpression, int, MathExpression) - Constructor for class omix.mathxp.MathOperation

MathOperation(MathOperation.Operator, MathExpression, MathExpression) - Constructor for class omix.mathxp.MathOperation

MathOperation.Operator - Enum in omix.mathxp

MathOperation2D - Class in omix.mathxp.ui.scene

MathOperation2D(MathParent2DInterface, MathOperation, boolean) - Constructor for class omix.mathxp.ui.scene.MathOperation2D

MathParent2DInterface - Interface in omix.mathxp.ui.scene

MathPointer - Class in omix.mathxp

MathPointer(MathReference, String) - Constructor for class omix.mathxp.MathPointer

MathPointer(MathReference, String, int, int) - Constructor for class omix.mathxp.MathPointer

MathPointer(UnitInterface, MathReference, String) - Constructor for class omix.mathxp.MathPointer

MathPointer(UnitInterface, MathReference, String, int, int) - Constructor for class omix.mathxp.MathPointer

MathReference - Class in omix.mathxp

MathReference(String) - Constructor for class omix.mathxp.MathReference

MathReference(String, int, int) - Constructor for class omix.mathxp.MathReference

MathReference(String, ReferenceInterface) - Constructor for class omix.mathxp.MathReference

MathReference(String, ReferenceInterface, int, int) - Constructor for class omix.mathxp.MathReference

MathReference(Map<String, ReferenceInterface>, String) - Constructor for class omix.mathxp.MathReference

MathReference(Map<String, ReferenceInterface>, String, int, int) - Constructor for class omix.mathxp.MathReference

MathReference(UnitInterface, String) - Constructor for class omix.mathxp.MathReference

MathReference(UnitInterface, String, int, int) - Constructor for class omix.mathxp.MathReference

MathReference(AbstractModelComponent) - Constructor for class omix.mathxp.MathReference

MathReference2D - Class in omix.mathxp.ui.scene

MathReference2D(MathParent2DInterface, MathReference) - Constructor for class omix.mathxp.ui.scene.MathReference2D

MathRoot2D - Class in omix.mathxp.ui.scene

MathRoot2D(Map<String, String>) - Constructor for class omix.mathxp.ui.scene.MathRoot2D

MathScene2D - Class in omix.mathxp.ui.scene

MathScene2D(List<MathExpression>, Map<String, String>) - Constructor for class omix.mathxp.ui.scene.MathScene2D

MathSymbolReaderInterface - Interface in omix.mathxp.io

MathSymbolWriterInterface - Interface in omix.mathxp.io

MathTypeHandler - Class in omix.mathxp.io

MathTypeHandler() - Constructor for class omix.mathxp.io.MathTypeHandler

MathUnit2D - Class in omix.mathxp.ui.scene

MathUnit2D(QGraphicsItem, UnitInterface) - Constructor for class omix.mathxp.ui.scene.MathUnit2D

MathUtilities - Class in omix.mathxp.util

Matrix2d - Class in omix.util.math.vector

This class is a 2 × 2 matrix with double precision.

Matrix2d() - Constructor for class omix.util.math.vector.Matrix2d

Matrix2d(Vec2d, Vec2d) - Constructor for class omix.util.math.vector.Matrix2d

The matrix has the form:
|p1.x, p2.x|
|p1.y, p2.y|

Matrix2f - Class in omix.util.math.vector

This class is a 2 × 2 matrix with double precision.

Matrix2f() - Constructor for class omix.util.math.vector.Matrix2f

Matrix2f(Vec2f, Vec2f) - Constructor for class omix.util.math.vector.Matrix2f

The matrix has the form:
|p1.x, p2.x|
|p1.y, p2.y|

Matrix4d - Class in omix.util.math.vector

This class is a 4 × 4 matrix with double precision.

Matrix4d() - Constructor for class omix.util.math.vector.Matrix4d

4 × 4 zeros.

Matrix4d(Matrix4d.RotationType, double) - Constructor for class omix.util.math.vector.Matrix4d

Initializes a rotation matrix of given type with the given angle.

Matrix4d(Vec4d) - Constructor for class omix.util.math.vector.Matrix4d

Transpation matrix.
The matrix has the form:
|1, 0, 0, pos.x|
|0, 1, 0, pos.y|
|0, 0, 1, pos.z|
|0, 0, 0, pos.w|

Matrix4d(Vec4d, double) - Constructor for class omix.util.math.vector.Matrix4d

Initializes a rotation matrix about the given axis with the given angle.

Matrix4d(Vec4d, Vec4d, Vec4d) - Constructor for class omix.util.math.vector.Matrix4d

Rotation matrix.
The matrix has the form:
|xAxis.x, yAxis.x, zAxis.x, 0|
|xAxis.y, yAxis.y, zAxis.y, 0|
|xAxis.z, yAxis.z, zAxis.z, 0|
|xAxis.w, yAxis.w, zAxis.w, 1|

Matrix4d.RotationType - Enum in omix.util.math.vector

Describes the type of rotation matrix.

Matrix4f - Class in omix.util.math.vector

This class is a 4 × 4 matrix with double precision.

Matrix4f() - Constructor for class omix.util.math.vector.Matrix4f

4 × 4 zeros.

Matrix4f(Matrix4f.RotationType, float) - Constructor for class omix.util.math.vector.Matrix4f

Initializes a rotation matrix of given type with the given angle.

Matrix4f(Vec4f) - Constructor for class omix.util.math.vector.Matrix4f

Transpation matrix.
The matrix has the form:
|1, 0, 0, pos.x|
|0, 1, 0, pos.y|
|0, 0, 1, pos.z|
|0, 0, 0, pos.w|

Matrix4f(Vec4f, float) - Constructor for class omix.util.math.vector.Matrix4f

Initializes a rotation matrix about the given axis with the given angle.

Matrix4f(Vec4f, Vec4f, Vec4f) - Constructor for class omix.util.math.vector.Matrix4f

Rotation matrix.
The matrix has the form:
|xAxis.x, yAxis.x, zAxis.x, 0|
|xAxis.y, yAxis.y, zAxis.y, 0|
|xAxis.z, yAxis.z, zAxis.z, 0|
|xAxis.w, yAxis.w, zAxis.w, 1|

Matrix4f.RotationType - Enum in omix.util.math.vector

Describes the type of rotation matrix.

max(int) - Method in class omix.lang.io.CSVDoubleTable

returns the maximum value of a row (index).

max(int) - Method in class omix.lang.io.CSVIntegerTable

returns the maximum value of a row (index).

max(Number) - Method in class omix.util.math.BigFraction

max(Number, Number) - Static method in class omix.mathxp.util.MathUtilities

max(Number, MathContext) - Method in class omix.util.math.BigFraction

max(String) - Method in class omix.lang.io.CSVDoubleTable

returns the maximum value of a column (identifier).

max(String) - Method in class omix.lang.io.CSVIntegerTable

returns the maximum value of a column (identifier).

max(Collection<? extends T>) - Static method in class omix.util.collections.Collections

max(Collection<? extends T>, Comparator<? super T>) - Static method in class omix.util.collections.Collections

maximum() - Method in interface omix.lang.model.accessory.trigger.DoubleTrigger

The minimum value of this trigger.

maximum() - Method in interface omix.lang.model.accessory.trigger.IntegerTrigger

The minimum value of this trigger.

maxVersion - Variable in class omix.util.licensing.LicenseKey

mBANG() - Method in class omix.mathxp.parser.MathExpressionsLexer

mBANGEQ() - Method in class omix.mathxp.parser.MathExpressionsLexer

mBAR() - Method in class omix.mathxp.parser.MathExpressionsLexer

mCARET() - Method in class omix.mathxp.parser.MathExpressionsLexer

mDOT() - Method in class omix.mathxp.parser.MathExpressionsLexer

Mega - omix.mathxp.units.SIPrefix

Member - Interface in omix.lang.reflect

This is the super type of all class and extension members.

mEQ() - Method in class omix.mathxp.parser.MathExpressionsLexer

mESC_SEQ() - Method in class omix.mathxp.parser.MathExpressionsLexer

message - Variable in class omix.mathxp.parser.MathExpressionsLexer.ErrorMessage

message - Variable in class omix.mathxp.util.Error.CustomError

message(String) - Method in interface omix.lang.UserRequest

Shows an message dialog window with the given message and OK-Cancel-buttons.

message(String, String) - Method in interface omix.plugin.util.Authenticator

Shows the given message as information dialog.

message(String, String, String, MessageType) - Method in interface omix.plugin.AbstractAccessManager

Shows a message from the plugin.

messageCollector() - Method in interface omix.plugin.data.DataInputUtilities

Returns a message collector for adding warnings and error messages.

messageCollector() - Method in interface omix.plugin.data.DataOutputUtilities

Returns a message collector for adding warnings and error messages.

messageCollector() - Method in interface omix.plugin.io.util.InputUtilities

Returns a message collector for adding warnings and error messages.

messageCollector() - Method in interface omix.plugin.io.util.OutputUtilities

Returns a message collector for adding warnings and error messages.

messageCollector() - Method in interface omix.plugin.ovl.OVLFieldConverterUtilities

Returns a message collector for adding warnings and error messages.

MessageCollector - Class in omix.plugin.io.util

This class collects messages.

MessageCollector() - Constructor for class omix.plugin.io.util.MessageCollector

messageType - Variable in class omix.mathxp.util.UnitCheckMessageCollectorInterface.UnitCheckMessage

MessageType - Enum in omix.plugin

Represents the types of messages from a plugin.

metabolicNetwork() - Method in interface omix.lang.model.Model

Deprecated.

MetabolicNetwork - Interface in omix.lang.model

Deprecated.

Metabolite - omix.plugin.io.ModelComponentProviderInterface.ItemType

Metabolite - Interface in omix.lang.model

Represents all instances of a metabolite pool in the metabolic network diagram.

Metabolite - Interface in omix.plugin.model

Metabolite - Interface in omix.plugin.model.writable

Metabolite - Interface in omix.plugin.motifstamp

Metabolite - Interface in omix.plugin.motifstamp.writable

metaboliteAccessoryAnchorFloating() - Method in interface omix.plugin.model.StyleSheet

metaboliteAccessoryAnchorPlacement() - Method in interface omix.plugin.model.StyleSheet

metaboliteAccessoryFloating() - Method in interface omix.plugin.model.StyleSheet

metaboliteAccessoryOrientation() - Method in interface omix.plugin.model.StyleSheet

metaboliteAccessorySpacing() - Method in interface omix.plugin.model.StyleSheet

metaboliteBlur() - Method in interface omix.plugin.model.StyleSheet

The blur of the node.

metaboliteCollapsed() - Method in interface omix.plugin.model.StyleSheet

Collapsed-state of the network component.

metaboliteFillLevel() - Method in interface omix.plugin.model.StyleSheet

The filling level of the item's shape given as percentage value.

metaboliteFillLevelIndication() - Method in interface omix.plugin.model.StyleSheet

The indication for filling of the item's shape.

metaboliteFont() - Method in interface omix.plugin.model.StyleSheet

The font of the text label of the item.

MetaboliteItem - Interface in omix.plugin.diagram

MetaboliteItem - Interface in omix.plugin.diagram.writable

metaboliteLabelConfiguration() - Method in interface omix.plugin.model.StyleSheet

metaboliteLabelFloating() - Method in interface omix.plugin.model.StyleSheet

metaboliteLabelHidden() - Method in interface omix.plugin.model.StyleSheet

metaboliteLabelPlacement() - Method in interface omix.plugin.model.StyleSheet

metabolitePaint() - Method in interface omix.plugin.model.StyleSheet

The fill appearance of the item's shape.

metabolites() - Method in interface omix.lang.model.Compartment

Returns an unchangeable List of all metabolites that occur in this compartment.

metabolites() - Method in interface omix.lang.model.MetabolicNetwork

Deprecated.

Returns an unchangeable List of all metabolite nodes.

metabolites() - Method in interface omix.lang.model.MetaboliteType

Returns all metabolite pools of different compartments.

metabolites() - Method in interface omix.lang.model.Model

Returns an unchangeable List of all metabolite nodes.

metabolites() - Method in interface omix.plugin.diagram.CompartmentItem

metabolites() - Method in interface omix.plugin.diagram.Diagram

Returns an unchangeable List of all metabolite nodes.

metabolites() - Method in interface omix.plugin.diagram.writable.CompartmentItem

metabolites() - Method in interface omix.plugin.diagram.writable.Diagram

Returns an unchangeable List of all metabolite nodes.

metabolites() - Method in interface omix.plugin.model.Compartment

Returns an unchangeable List of all metabolites that occur in this compartment.

metabolites() - Method in interface omix.plugin.model.MetaboliteType

Returns all metabolite pools of different compartments.

metabolites() - Method in interface omix.plugin.model.Model

Returns an unchangeable List of all metabolite nodes.

metabolites() - Method in interface omix.plugin.model.writable.Compartment

Returns an unchangeable List of all metabolites that occur in this compartment.

metabolites() - Method in interface omix.plugin.model.writable.MetaboliteType

Returns all metabolite pools of different compartments.

metabolites() - Method in interface omix.plugin.model.writable.Model

Returns an unchangeable List of all metabolite nodes.

metabolites() - Method in interface omix.plugin.motifstamp.MotifStamp

metabolites() - Method in interface omix.plugin.motifstamp.writable.MotifStamp

Metabolites - omix.plugin.identity.IdentifierCollection.TargetType

metaboliteScale() - Method in interface omix.plugin.model.StyleSheet

The scale factor the node is displayed with.

metaboliteShadow() - Method in interface omix.plugin.model.StyleSheet

The shadow of the item.

metaboliteShape() - Method in interface omix.plugin.model.StyleSheet

The appearance of the metabolite node in the diagram.

metaboliteStrokeColor() - Method in interface omix.plugin.model.StyleSheet

The color for the stroke of the item's shape.

metaboliteStrokeStyle() - Method in interface omix.plugin.model.StyleSheet

The paint style for the stroke of the item's shape.

metaboliteStrokeWidth() - Method in interface omix.plugin.model.StyleSheet

The stroke width of the item's shape.

metaboliteTextBrush() - Method in interface omix.plugin.model.StyleSheet

The fill brush of the item's text label.

metaboliteTextStrokeColor() - Method in interface omix.plugin.model.StyleSheet

The color for the stroke of the item's text label.

metaboliteTextStrokeWidth() - Method in interface omix.plugin.model.StyleSheet

The stroke width of the item's text label.

metaboliteTransparency() - Method in interface omix.plugin.model.StyleSheet

The transparency of the node.

metaboliteType() - Method in interface omix.lang.model.Metabolite

returns the type of this metabolite.

metaboliteType() - Method in interface omix.plugin.model.Metabolite

returns the type of this metabolite.

metaboliteType() - Method in interface omix.plugin.model.writable.Metabolite

returns the type of this metabolite.

MetaboliteType - Interface in omix.lang.model

This class represents the type of metabolites in different compartments.

MetaboliteType - Interface in omix.plugin.model

This class represents metabolite types of a biochamical model.

MetaboliteType - Interface in omix.plugin.model.writable

metaboliteTypeExists(String) - Method in interface omix.plugin.model.Model

Determines if metabolite type of certain name exists.

metaboliteTypeExists(String) - Method in interface omix.plugin.model.writable.Model

Determines if metabolite type of certain name exists.

metaboliteTypes() - Method in interface omix.lang.model.Model

Returns all metabolite types of the model.

metaboliteTypes() - Method in interface omix.plugin.model.Model

All metabolite types being part of the model.

metaboliteTypes() - Method in interface omix.plugin.model.writable.Model

All metabolite types being part of the model.

MetaData() - Constructor for class omix.plugin.data.DataMatrixInterface.MetaData

Method - Interface in omix.lang.reflect

This interface represents a method defined in OVL code.

METHOD - omix.plugin.ovl.annotation.OVLTarget.OVLElementType

methodExists(String) - Method in interface omix.plugin.ovl.AbstractOVLType

Determines if method exists in type definition or supertypes.

MetNode - Interface in omix.lang.model

Deprecated.

metre - omix.mathxp.units.SIUnit

mEXPONENT() - Method in class omix.mathxp.parser.MathExpressionsLexer

mFLOAT() - Method in class omix.mathxp.parser.MathExpressionsLexer

mGT() - Method in class omix.mathxp.parser.MathExpressionsLexer

mGTEQ() - Method in class omix.mathxp.parser.MathExpressionsLexer

mHEX_DIGIT() - Method in class omix.mathxp.parser.MathExpressionsLexer

micro - omix.mathxp.units.SIPrefix

MICRO - Static variable in class omix.mathxp.parser.MathExpressionsLexer

MICRO - Static variable in class omix.mathxp.parser.MathExpressionsParser

mID() - Method in class omix.mathxp.parser.MathExpressionsLexer

Middle - omix.lang.chart.util.Axis.LabelLocation

Axis label at the middle.

Middle - omix.lang.chart.util.CategoryChartStyle.Anchor

milli - omix.mathxp.units.SIPrefix

min(int) - Method in class omix.lang.io.CSVDoubleTable

returns the minimum value of a row (index).

min(int) - Method in class omix.lang.io.CSVIntegerTable

returns the minimum value of a row (index).

min(Number) - Method in class omix.util.math.BigFraction

min(Number, Number) - Static method in class omix.mathxp.util.MathUtilities

min(Number, MathContext) - Method in class omix.util.math.BigFraction

min(String) - Method in class omix.lang.io.CSVDoubleTable

returns the minimum value of a column (identifier).

min(String) - Method in class omix.lang.io.CSVIntegerTable

returns the minimum value of a column (identifier).

min(Collection<? extends T>) - Static method in class omix.util.collections.Collections

min(Collection<? extends T>, Comparator<? super T>) - Static method in class omix.util.collections.Collections

minimum() - Method in interface omix.lang.model.accessory.trigger.DoubleTrigger

The maximum value of this trigger.

minimum() - Method in interface omix.lang.model.accessory.trigger.IntegerTrigger

The maximum value of this trigger.

minimumSpeed() - Method in interface omix.lang.model.accessory.trigger.DoublePlayer

minimum progress speed of the player

minimumSpeed() - Method in interface omix.lang.model.accessory.trigger.Player

minimum progress speed of the player

MINOR_VERSION - Static variable in class omix.util.APIVersion

minorVersion - Variable in class omix.util.VersionNumber

MINOR version number

mINT() - Method in class omix.mathxp.parser.MathExpressionsLexer

minus(Vec2d) - Method in class omix.util.math.vector.Vec2d

minus(Vec2f) - Method in class omix.util.math.vector.Vec2f

minus(Vec4d) - Method in class omix.util.math.vector.Vec4d

minus(Vec4f) - Method in class omix.util.math.vector.Vec4f

minus(T) - Method in class omix.util.math.vector.AbstractVec

Subtraction

minute - omix.mathxp.units.DerivedUnit

minVersion - Variable in class omix.util.licensing.LicenseKey

MismatchingFactors - omix.mathxp.util.UnitCheckMessageCollectorInterface.UnitCheckMessage.MessageType

MismatchingUnits - omix.mathxp.util.UnitCheckMessageCollectorInterface.UnitCheckMessage.MessageType

MismatchingUnitsError(UnitInterface, UnitInterface, MathExpression) - Constructor for class omix.mathxp.util.Error.MismatchingUnitsError

mkdir(String) - Method in interface omix.plugin.net.URLConnectionInterface

Creates a new directory.

mKOMMA() - Method in class omix.mathxp.parser.MathExpressionsLexer

mLBRACKET() - Method in class omix.mathxp.parser.MathExpressionsLexer

mLPAREN() - Method in class omix.mathxp.parser.MathExpressionsLexer

mLT() - Method in class omix.mathxp.parser.MathExpressionsLexer

mLTEQ() - Method in class omix.mathxp.parser.MathExpressionsLexer

mMICRO() - Method in class omix.mathxp.parser.MathExpressionsLexer

mOCTAL_ESC() - Method in class omix.mathxp.parser.MathExpressionsLexer

model() - Method in interface omix.lang.model.Comment

Deprecated.

Returns the model this item belongs to.

model() - Method in interface omix.lang.model.Compartment

Returns the model this item belongs to.

model() - Method in interface omix.lang.model.Edge

Returns the model this item belongs to.

model() - Method in interface omix.lang.model.GraphicsBox

Returns the model this item belongs to.

model() - Method in interface omix.lang.model.GraphicsItem

Deprecated.

Returns the model this item belongs to.

model() - Method in interface omix.lang.model.GraphicsPath

Returns the model this item belongs to.

model() - Method in interface omix.lang.model.MetaboliteType

returns the model.

model() - Method in interface omix.lang.model.Node

Returns the model this item belongs to.

model() - Method in interface omix.lang.model.Pathway

Returns the model this item belongs to.

model() - Method in interface omix.plugin.diagram.Diagram

model() - Method in interface omix.plugin.diagram.writable.Diagram

model() - Method in interface omix.plugin.model.AbstractModelComponent

Reference to the model instance.

model() - Method in interface omix.plugin.model.writable.AbstractModelComponent

Model - Interface in omix.lang.model

This class represents the network model.

Model - Interface in omix.plugin.model

This method represents the complete network model.

Model - Interface in omix.plugin.model.writable

The writable model can be used to create and add additional components to a network model document.

ModelCapabilities - Class in omix.plugin.model.util

ModelCapabilities(ModelCapabilities) - Constructor for class omix.plugin.model.util.ModelCapabilities

ModelCapabilities(ModelCapability...) - Constructor for class omix.plugin.model.util.ModelCapabilities

ModelCapability - Enum in omix.plugin.model.util

ModelChangeEvent - Class in omix.plugin.model.util

ModelChangeEvent(Object, ChangeEvent.EventType, Object) - Constructor for class omix.plugin.model.util.ModelChangeEvent

ModelChangeListener - Interface in omix.plugin.model.util

modelChangeOccurred(ModelChangeEvent) - Method in interface omix.plugin.model.util.ModelChangeListener

modelChangeOccurred(ModelChangeEvent) - Method in class omix.util.SynchronousModelChangeListener

modelChangeOccurred(ModelChangeEvent) - Method in class omix.util.ui.EventBasedModelChangeListener

modelComponent() - Method in interface omix.plugin.diagram.AbstractBioNodeItem

modelComponent() - Method in interface omix.plugin.diagram.AbstractEdgeItem

modelComponent() - Method in interface omix.plugin.diagram.AbstractModelItem

modelComponent() - Method in interface omix.plugin.diagram.AbstractNodeItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.AccessoryItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.annotation.AbstractSideBoxItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.annotation.AnnotationArrayItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.annotation.ChartSideBoxItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.annotation.DataAnnotationItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.annotation.DoubleFieldItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.annotation.ImageFieldItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.annotation.IntegerFieldItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.annotation.ItemGroupItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.annotation.ObjectFieldItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.annotation.SideBoxItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.annotation.SimpleValueFieldItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.annotation.TextFieldItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.ArrayItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.trigger.CheckButtonItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.trigger.DoublePlayerItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.trigger.DoubleSliderItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.trigger.DoubleSpinBoxItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.trigger.DoubleTriggerItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.trigger.IntegerTriggerItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.trigger.PlayerItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.trigger.PushButtonItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.trigger.SliderItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.trigger.SpinBoxItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.trigger.TriggerArrayItem

modelComponent() - Method in interface omix.plugin.diagram.accessory.trigger.TriggerItem

modelComponent() - Method in interface omix.plugin.diagram.CompartmentItem

modelComponent() - Method in interface omix.plugin.diagram.EffectorEdgeItem

modelComponent() - Method in interface omix.plugin.diagram.FluxEdgeItem

modelComponent() - Method in interface omix.plugin.diagram.GraphicsBoxItem

modelComponent() - Method in interface omix.plugin.diagram.GraphicsEdgeItem

modelComponent() - Method in interface omix.plugin.diagram.GraphicsNodeItem

modelComponent() - Method in interface omix.plugin.diagram.GraphicsPathItem

modelComponent() - Method in interface omix.plugin.diagram.LinkEdgeItem

modelComponent() - Method in interface omix.plugin.diagram.LinkItem

modelComponent() - Method in interface omix.plugin.diagram.MetaboliteItem

modelComponent() - Method in interface omix.plugin.diagram.PathwayItem

modelComponent() - Method in interface omix.plugin.diagram.ReactionItem

modelComponent() - Method in interface omix.plugin.diagram.writable.AbstractBioNodeItem

modelComponent() - Method in interface omix.plugin.diagram.writable.AbstractEdgeItem

modelComponent() - Method in interface omix.plugin.diagram.writable.AbstractModelItem

modelComponent() - Method in interface omix.plugin.diagram.writable.AbstractNodeItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.AccessoryItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.annotation.AbstractSideBoxItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.annotation.AnnotationArrayItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.annotation.ChartSideBoxItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.annotation.DataAnnotationItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.annotation.DoubleFieldItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.annotation.ImageFieldItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.annotation.IntegerFieldItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.annotation.ItemGroupItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.annotation.ObjectFieldItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.annotation.SideBoxItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.annotation.SimpleValueFieldItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.annotation.TextFieldItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.ArrayItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.trigger.CheckButtonItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.trigger.DoublePlayerItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.trigger.DoubleSliderItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.trigger.DoubleSpinBoxItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.trigger.DoubleTriggerItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.trigger.IntegerTriggerItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.trigger.PlayerItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.trigger.PushButtonItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.trigger.SliderItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.trigger.SpinBoxItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.trigger.TriggerArrayItem

modelComponent() - Method in interface omix.plugin.diagram.writable.accessory.trigger.TriggerItem

modelComponent() - Method in interface omix.plugin.diagram.writable.CompartmentItem

modelComponent() - Method in interface omix.plugin.diagram.writable.EffectorEdgeItem

modelComponent() - Method in interface omix.plugin.diagram.writable.FluxEdgeItem

modelComponent() - Method in interface omix.plugin.diagram.writable.GraphicsBoxItem

modelComponent() - Method in interface omix.plugin.diagram.writable.GraphicsEdgeItem

modelComponent() - Method in interface omix.plugin.diagram.writable.GraphicsNodeItem

modelComponent() - Method in interface omix.plugin.diagram.writable.GraphicsPathItem

modelComponent() - Method in interface omix.plugin.diagram.writable.LinkEdgeItem

modelComponent() - Method in interface omix.plugin.diagram.writable.LinkItem

modelComponent() - Method in interface omix.plugin.diagram.writable.MetaboliteItem

modelComponent() - Method in interface omix.plugin.diagram.writable.PathwayItem

modelComponent() - Method in interface omix.plugin.diagram.writable.ReactionItem

ModelComponentProviderFactory - Interface in omix.plugin.io

ModelComponentProviderInterface - Interface in omix.plugin.io

ModelComponentProviderInterface.ItemType - Enum in omix.plugin.io

ModelDocument - Interface in omix.plugin

This interface type represents an active network model document.

ModelIOHandlerFactory - Interface in omix.plugin.io

This interface must be derived by a custom plugin class in order to implement an import and/or export filter for Omix networks.
A custom class implementing ModelIOHandlerFactory can be registered at the Omix Plugin Manager:

ModelIOHandlerInterface - Interface in omix.plugin.io

This interface allows to realize a network import and export plugin.
Implementing classes must register a set of supported file name suffixes (like "xml", "fml", "doc").

ModelReader - Interface in omix.plugin

By implementing this interface, a plugin can realize a model reading procedure.

Models - omix.plugin.identity.IdentifierCollection.TargetType

ModelTemplateInfo - Class in omix.plugin.templates

ModelTemplateInfo(URL) - Constructor for class omix.plugin.templates.ModelTemplateInfo

ModelTemplateProviderFactory - Interface in omix.plugin.templates

ModelTemplateProviderInterface - Interface in omix.plugin.templates

ModelWriter - Interface in omix.plugin

By implementing this interface, a plugin can realize a model writing procedure.

mOHM() - Method in class omix.mathxp.parser.MathExpressionsLexer

mole - omix.mathxp.units.SIUnit

MotifStamp - Interface in omix.plugin.motifstamp

MotifStamp - Interface in omix.plugin.motifstamp.writable

motifStampExists(String) - Method in interface omix.plugin.model.Model

motifStamps() - Method in interface omix.plugin.model.Model

motifStamps() - Method in interface omix.plugin.model.writable.Model

movable() - Method in annotation type omix.lang.annotation.Capabilities

movable() - Method in annotation type omix.lang.annotation.Editable

MoveDiagram - omix.plugin.model.util.ChangeEvent.EventType

moveObjectToInvokerThread(QObject) - Method in class omix.util.ui.EventThread

moveToThread(QThread) - Method in interface omix.plugin.type.TypeGraphicsHandlerInterface.ValuePainterInterface

MoviePaintDeviceInterface - Interface in omix.plugin.paint

This interface must be implemented in order to realize a movie export feature for Omix.

mPLUS() - Method in class omix.mathxp.parser.MathExpressionsLexer

mQUESTION() - Method in class omix.mathxp.parser.MathExpressionsLexer

mRBRACKET() - Method in class omix.mathxp.parser.MathExpressionsLexer

mRPAREN() - Method in class omix.mathxp.parser.MathExpressionsLexer

mSEMI() - Method in class omix.mathxp.parser.MathExpressionsLexer

mSHARP() - Method in class omix.mathxp.parser.MathExpressionsLexer

mSLASH() - Method in class omix.mathxp.parser.MathExpressionsLexer

mSTAR() - Method in class omix.mathxp.parser.MathExpressionsLexer

mSTRING() - Method in class omix.mathxp.parser.MathExpressionsLexer

mSUB() - Method in class omix.mathxp.parser.MathExpressionsLexer

mTILDE() - Method in class omix.mathxp.parser.MathExpressionsLexer

mTokens() - Method in class omix.mathxp.parser.MathExpressionsLexer

MUL - omix.mathxp.MathOperation.Operator

MultiplePieChart - Class in omix.lang.chart

MultiplePieChart() - Constructor for class omix.lang.chart.MultiplePieChart

MultiplePieChart(CategoryDataset) - Constructor for class omix.lang.chart.MultiplePieChart

MultiplePieChart3D - Class in omix.lang.chart

MultiplePieChart3D() - Constructor for class omix.lang.chart.MultiplePieChart3D

MultiplePieChart3D(CategoryDataset) - Constructor for class omix.lang.chart.MultiplePieChart3D

MultiplePieChartStyle - Class in omix.lang.chart.util

MultiplePieChartStyle() - Constructor for class omix.lang.chart.util.MultiplePieChartStyle

MultipleRingChart - Class in omix.lang.chart

MultipleRingChart() - Constructor for class omix.lang.chart.MultipleRingChart

MultipleRingChart(CategoryDataset) - Constructor for class omix.lang.chart.MultipleRingChart

multiplicativeExpression() - Method in class omix.mathxp.parser.MathExpressionsParser

multiplier - Variable in class omix.mathxp.units.UnitFactor

Multiplier(MathExpression, MathExpression) - Constructor for class omix.mathxp.util.ExpressionUtilities.Multiplier

MultiplierList() - Constructor for class omix.mathxp.util.ExpressionUtilities.MultiplierList

multiply(Number) - Method in class omix.util.math.BigFraction

multiply(Number, Number) - Static method in class omix.mathxp.util.MathUtilities

multiply(Number, MathContext) - Method in class omix.util.math.BigFraction

multiply(MathExpression, MathExpression, List<Error>) - Method in class omix.mathxp.util.ExpressionUtilities.MultiplierList

multiply(UnitInterface, UnitInterface) - Static method in class omix.mathxp.units.UnitUtilities

multiply(ExpressionUtilities.MultiplierList, List<Error>) - Method in class omix.mathxp.util.ExpressionUtilities.MultiplierList

mUNICODE_ESC() - Method in class omix.mathxp.parser.MathExpressionsLexer

mWS() - Method in class omix.mathxp.parser.MathExpressionsLexer

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